hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00011064/chunk_1/iprscan-20090618-00011064.nocrc
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Query sequence: bm03858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00899.11.fs ThiF family                                     49.2    1.7e-13   1
PF00899.11.ls ThiF family                                     51.1    3.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00899.11.fs   1/1      43   174 ..     1   144 []    49.2  1.7e-13
PF00899.11.ls   1/1      43   174 ..     1   144 []    51.1  3.4e-12

Alignments of top-scoring domains:
PF00899.11.fs: domain 1 of 1, from 43 to 174: score 49.2, E = 1.7e-13
                   *->rssrVlvvGaGGlGspaaeyLAraGvGkltlvDfDtVElSNLnRQiL
                      r+srVl+vG+ GlG ++a++L  aGv+ lt  D+ +V + +   Q+L
     bm03858    43    RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFL 89   

                   fteaDiGkpKaevAkerlreiNPdveveayperlteenaeellFkqkkdv
                    ++  +G++ ae+  er++ +NP v v++ +e++  e  +e +F    ++
     bm03858    90 IRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDI--EKKPESFFT---QF 134  

                   pDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGqvptvi<-*
                    D v   + + +  + +++  +c+k+ i++ ++ v  g+  +  +++   
     bm03858   135 -DAVCLTCCSRDVIVKVDQ--ICHKNSIKFFTGDVF-GY--HG-YTF    174  

PF00899.11.ls: domain 1 of 1, from 43 to 174: score 51.1, E = 3.4e-12
                   *->rssrVlvvGaGGlGspaaeyLAraGvGkltlvDfDtVElSNLnRQiL
                      r+srVl+vG+ GlG ++a++L  aGv+ lt  D+ +V + +   Q+L
     bm03858    43    RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFL 89   

                   fteaDiGkpKaevAkerlreiNPdveveayperlteenaeellFkqkkdv
                    ++  +G++ ae+  er++ +NP v v++ +e++  e  +e +F    ++
     bm03858    90 IRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDI--EKKPESFFT---QF 134  

                   pDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGqvptvi<-*
                    D v   + + +  + +++  +c+k+ i++ ++ v  g+  +  +++   
     bm03858   135 -DAVCLTCCSRDVIVKVDQ--ICHKNSIKFFTGDVF-GY--HG-YTF    174  

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