hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00071572/chunk_1/iprscan-20090618-00071572.nocrc
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Query sequence: bm03911
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF06732.2.fs Pescadillo N-terminus                      713.5   2.1e-225   1
PF06732.2.ls Pescadillo N-terminus                      715.4   3.8e-212   1
PF00533.16.fs BRCA1 C Terminus (BRCT) domain              46.0      1e-12   1
PF00533.16.ls BRCA1 C Terminus (BRCT) domain              47.7    3.7e-11   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF06732.2.fs   1/1      13   294 ..     1   298 []   713.5 2.1e-225
PF06732.2.ls   1/1      13   294 ..     1   298 []   715.4 3.8e-212
PF00533.16.fs   1/1     329   409 ..     1    96 []    46.0    1e-12
PF00533.16.ls   1/1     329   409 ..     1    96 []    47.7  3.7e-11

Alignments of top-scoring domains:
PF06732.2.fs: domain 1 of 1, from 13 to 294: score 713.5, E = 2.1e-225
                   *->KkKyerGaAtkYiTRkqAlrKLQLsLadFRRLCIlKGIYPREPKhik
                      KkKyerG+At+YiTR++A++KLQLsLadFRRLCIlKGIYP+EPKh k
     bm03911    13    KKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKH-K 58   

                   KKanKGSTaektfYyaKDIrfLlHEpIvnKFReYKiFakKlkkAkLakke
                   KK+nKGSTa++tfY++KDIrfLlHEpIvnKFReYK+F++Kl+kA+ +k+e
     bm03911    59 KKVNKGSTAARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAY-GKSE 107  

                   fetlKrLeanRVkPvYkLDhIIKERYPtFiDALRDlDDALSMlFLFStLP
                   ++t++rL++n  kP+YkLDhIIKERYPtFiDALRDlDDALSM+FLFSt+P
     bm03911   108 WNTVERLKDN--KPNYKLDHIIKERYPTFIDALRDLDDALSMCFLFSTFP 155  

                   sthksDTTIEIHHsiksktvnlCrrLtaeFmhYVirsrsLRKvFiSIKGi
                   +t+k          ++++t++lCrrLt+eFmhY+i++r+LRKvF+SIKGi
     bm03911   156 RTGK----------CHVQTIQLCRRLTVEFMHYIIAARALRKVFLSIKGI 195  

                   YYQAEIkGekvTWivPHYYeFahnfptDVDFrVMltFlEFYttLLgFVNF
                   YYQAE++G++++Wi+P+  +F+h++ptDVD+rVM+tF+EFYttLLgFVNF
     bm03911   196 YYQAEVLGQPIVWITPY--AFSHDHPTDVDYRVMATFTEFYTTLLGFVNF 243  

                   KLYqdlnLlYPPkldseleeeaaallaydaevssslaaldvganqeqakv
                   +LYq+lnL+YPPkl++++++ea+a + ++a +s+s+++++++ ++++a+v
     bm03911   244 RLYQLLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARV 293  

                   v<-*
                   v   
     bm03911   294 V    294  

PF06732.2.ls: domain 1 of 1, from 13 to 294: score 715.4, E = 3.8e-212
                   *->KkKyerGaAtkYiTRkqAlrKLQLsLadFRRLCIlKGIYPREPKhik
                      KkKyerG+At+YiTR++A++KLQLsLadFRRLCIlKGIYP+EPKh k
     bm03911    13    KKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKH-K 58   

                   KKanKGSTaektfYyaKDIrfLlHEpIvnKFReYKiFakKlkkAkLakke
                   KK+nKGSTa++tfY++KDIrfLlHEpIvnKFReYK+F++Kl+kA+ +k+e
     bm03911    59 KKVNKGSTAARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAY-GKSE 107  

                   fetlKrLeanRVkPvYkLDhIIKERYPtFiDALRDlDDALSMlFLFStLP
                   ++t++rL++n  kP+YkLDhIIKERYPtFiDALRDlDDALSM+FLFSt+P
     bm03911   108 WNTVERLKDN--KPNYKLDHIIKERYPTFIDALRDLDDALSMCFLFSTFP 155  

                   sthksDTTIEIHHsiksktvnlCrrLtaeFmhYVirsrsLRKvFiSIKGi
                   +t+k          ++++t++lCrrLt+eFmhY+i++r+LRKvF+SIKGi
     bm03911   156 RTGK----------CHVQTIQLCRRLTVEFMHYIIAARALRKVFLSIKGI 195  

                   YYQAEIkGekvTWivPHYYeFahnfptDVDFrVMltFlEFYttLLgFVNF
                   YYQAE++G++++Wi+P+  +F+h++ptDVD+rVM+tF+EFYttLLgFVNF
     bm03911   196 YYQAEVLGQPIVWITPY--AFSHDHPTDVDYRVMATFTEFYTTLLGFVNF 243  

                   KLYqdlnLlYPPkldseleeeaaallaydaevssslaaldvganqeqakv
                   +LYq+lnL+YPPkl++++++ea+a + ++a +s+s+++++++ ++++a+v
     bm03911   244 RLYQLLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARV 293  

                   v<-*
                   v   
     bm03911   294 V    294  

PF00533.16.fs: domain 1 of 1, from 329 to 409: score 46.0, E = 1e-12
                   *->p.eklfkgltfvitggldgfereeleleelieklGGkv.........
                      ++ klf+gl+f++    ++ +re l   ++i+++GG+v+ +++   +
     bm03911   329    KhKKLFEGLKFFL---NREVPREAL--AFIIRSFGGEVswdkslcig 370  

                   ..tsslskktthvislvgepkypkieiifigsleagtskkllkakalgip
                    +++  ++++th i  v++p                      +    g  
     bm03911   371 atYDVTDSRITHQI--VDRP--------------------GQQTSVIGRC 398  

                   ivteeWlldci<-*
                   +v ++W++d++   
     bm03911   399 YVQPQWVFDSV    409  

PF00533.16.ls: domain 1 of 1, from 329 to 409: score 47.7, E = 3.7e-11
                   *->p.eklfkgltfvitggldgfereeleleelieklGGkv.........
                      ++ klf+gl+f++    ++ +re l   ++i+++GG+v+ +++   +
     bm03911   329    KhKKLFEGLKFFL---NREVPREAL--AFIIRSFGGEVswdkslcig 370  

                   ..tsslskktthvislvgepkypkieiifigsleagtskkllkakalgip
                    +++  ++++th i  v++p                      +    g  
     bm03911   371 atYDVTDSRITHQI--VDRP--------------------GQQTSVIGRC 398  

                   ivteeWlldci<-*
                   +v ++W++d++   
     bm03911   399 YVQPQWVFDSV    409  

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