hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18251648/chunk_1/iprscan-20080807-18251648.nocrc
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Query sequence: bm03978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01529.11.ls DHHC zinc finger domain                        119.7    7.5e-33   1
PF01529.11.fs DHHC zinc finger domain                        117.8    8.9e-33   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01529.11.fs   1/1     156   219 ..     1    66 []   117.8  8.9e-33
PF01529.11.ls   1/1     156   219 ..     1    66 []   119.7  7.5e-33

Alignments of top-scoring domains:
PF01529.11.fs: domain 1 of 1, from 156 to 219: score 117.8, E = 8.9e-33
                   *->ldndkfikdnfCskCnsyKVPpRShHCsvCnkCVlrmDHHCpWinnC
                      ++n+   k ++C +C++++ PpR++HCs C++CV+r+DHHCpW++nC
     bm03978   156    INNQ-IVKLKYCYTCKIFR-PPRASHCSICDNCVERFDHHCPWVGNC 200  

                   VGlrNyryFllFlfylill<-*
                   VG+rNyryF+lF+++l+ll   
     bm03978   201 VGKRNYRYFYLFILSLSLL    219  

PF01529.11.ls: domain 1 of 1, from 156 to 219: score 119.7, E = 7.5e-33
                   *->ldndkfikdnfCskCnsyKVPpRShHCsvCnkCVlrmDHHCpWinnC
                      ++n+   k ++C +C++++ PpR++HCs C++CV+r+DHHCpW++nC
     bm03978   156    INNQ-IVKLKYCYTCKIFR-PPRASHCSICDNCVERFDHHCPWVGNC 200  

                   VGlrNyryFllFlfylill<-*
                   VG+rNyryF+lF+++l+ll   
     bm03978   201 VGKRNYRYFYLFILSLSLL    219  

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