hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-18304600/chunk_1/iprscan-20080807-18304600.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03987 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09311.1.fs Rab5 binding 328.0 1.5e-95 2 PF09311.1.ls Rab5 binding 311.9 1.1e-90 1 PF00515.18.fs Tetratricopeptide repeat 111.5 1e-30 6 PF00515.18.ls Tetratricopeptide repeat 110.0 6.4e-30 5 PF07719.7.ls Tetratricopeptide repeat 105.0 2e-28 6 PF07719.7.fs Tetratricopeptide repeat 95.2 1.2e-25 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09311.1.ls 1/1 92 266 .. 1 210 [] 311.9 1.1e-90 PF09311.1.fs 1/2 92 266 .. 1 210 [] 310.0 4e-90 PF00515.18.fs 2/6 267 300 .. 1 34 [] 15.7 0.0019 PF00515.18.ls 1/5 267 300 .. 1 34 [] 17.7 0.039 PF07719.7.ls 3/6 309 342 .. 1 34 [] 26.1 0.00011 PF00515.18.ls 2/5 309 342 .. 1 34 [] 35.0 2.5e-07 PF00515.18.fs 3/6 309 342 .. 1 34 [] 33.0 2.2e-08 PF00515.18.fs 4/6 351 384 .. 1 34 [] 25.8 2.5e-06 PF00515.18.ls 3/5 351 384 .. 1 34 [] 27.8 3.6e-05 PF07719.7.ls 4/6 351 384 .. 1 34 [] 25.0 0.00025 PF00515.18.ls 4/5 393 426 .. 1 34 [] 25.0 0.00025 PF00515.18.fs 5/6 393 426 .. 1 34 [] 23.0 1.6e-05 PF07719.7.ls 5/6 393 426 .. 1 34 [] 22.1 0.0018 PF00515.18.fs 6/6 476 496 .. 1 21 [. 11.4 0.031 Alignments of top-scoring domains: PF09311.1.ls: domain 1 of 1, from 92 to 266: score 311.9, E = 1.1e-90 *->eLqlsfaqvqeavqeqLqeleaekqklraqvrRLqqeNqwLrgelaa eL+ls+aqv++a++++L+++e+ekqklraqvrRL+qeNqwLr+ela+ bm03987 92 ELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELAN 138 tqqklgqqseqeviqLpeevkhLqflvlqkredliesrtaseHleeelks tqqkl q+seq+v+qL+ee+khL+f++++k++d++ s+++ +++++s bm03987 139 TQQKL-QKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSE----DKDTDS 183 eidlLkeqIqeErclkpnlEeelaaeiEncKEEiaslssLkteleqiqse ++++L++ l+pn+E++ ++ i + q+ s bm03987 184 TKEPLDD-------LFPNDEDDPGQGI----------------QQQHSSA 210 kdqlqaslyEiparlrtLhnlviqyesqgryekeLeesvVaVplcKaALE ++++q+++yEiparlrtLhnlviqy+sqgrye VaVplcK+ALE bm03987 211 AAAAQQGGYEIPARLRTLHNLVIQYASQGRYE-------VAVPLCKQALE 253 dLekesghkhpdl<-* dLek+sgh+hpd+ bm03987 254 DLEKTSGHDHPDV 266 PF09311.1.fs: domain 1 of 2, from 92 to 266: score 310.0, E = 4e-90 *->eLqlsfaqvqeavqeqLqeleaekqklraqvrRLqqeNqwLrgelaa eL+ls+aqv++a++++L+++e+ekqklraqvrRL+qeNqwLr+ela+ bm03987 92 ELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELAN 138 tqqklgqqseqeviqLpeevkhLqflvlqkredliesrtaseHleeelks tqqkl q+seq+v+qL+ee+khL+f++++k++d++ s+++ +++++s bm03987 139 TQQKL-QKSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSE----DKDTDS 183 eidlLkeqIqeErclkpnlEeelaaeiEncKEEiaslssLkteleqiqse ++++L++ l+pn+E++ ++ i + q+ s bm03987 184 TKEPLDD-------LFPNDEDDPGQGI----------------QQQHSSA 210 kdqlqaslyEiparlrtLhnlviqyesqgryekeLeesvVaVplcKaALE ++++q+++yEiparlrtLhnlviqy+sqgrye VaVplcK+ALE bm03987 211 AAAAQQGGYEIPARLRTLHNLVIQYASQGRYE-------VAVPLCKQALE 253 dLekesghkhpdl<-* dLek+sgh+hpd+ bm03987 254 DLEKTSGHDHPDV 266 PF00515.18.fs: domain 2 of 6, from 267 to 300: score 15.7, E = 0.0019 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a ++ l+++y+ ++ky++A ++ AL+++++ bm03987 267 ATMLNILALVYRDQNKYKDAANLLNDALAIREKT 300 PF00515.18.ls: domain 1 of 5, from 267 to 300: score 17.7, E = 0.039 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a ++ l+++y+ ++ky++A ++ AL+++++ bm03987 267 ATMLNILALVYRDQNKYKDAANLLNDALAIREKT 300 PF07719.7.ls: domain 3 of 6, from 309 to 342: score 26.1, E = 0.00011 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+nl+++y k+g+y+eA+ ++++Ale+ ++ bm03987 309 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 342 PF00515.18.ls: domain 2 of 5, from 309 to 342: score 35.0, E = 2.5e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +++nl+++y k+gky+eA+ +++ALe++++ bm03987 309 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 342 PF00515.18.fs: domain 3 of 6, from 309 to 342: score 33.0, E = 2.2e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a +++nl+++y k+gky+eA+ +++ALe++++ bm03987 309 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 342 PF00515.18.fs: domain 4 of 6, from 351 to 384: score 25.8, E = 2.5e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl++++ ++gky+e + +y++ALe+ + bm03987 351 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 384 PF00515.18.ls: domain 3 of 5, from 351 to 384: score 27.8, E = 3.6e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl++++ ++gky+e + +y++ALe+ + bm03987 351 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 384 PF07719.7.ls: domain 4 of 6, from 351 to 384: score 25.0, E = 0.00025 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+nl+l++ ++g+yee + +y++Ale++ + bm03987 351 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 384 PF00515.18.ls: domain 4 of 5, from 393 to 426: score 25.0, E = 0.00025 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++ +nl+ +ylk+gk+++A+ y++ L + bm03987 393 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 426 PF00515.18.fs: domain 5 of 6, from 393 to 426: score 23.0, E = 1.6e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++ +nl+ +ylk+gk+++A+ y++ L + bm03987 393 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 426 PF07719.7.ls: domain 5 of 6, from 393 to 426: score 22.1, E = 0.0018 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ +nl+ +y+k+g++++A+ +y++ l + + bm03987 393 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 426 PF00515.18.fs: domain 6 of 6, from 476 to 496: score 11.4, E = 0.031 *->aeayynlGnaylklgkydeAi<-* +++nlG++y+++gk+++A+ bm03987 476 TTTLKNLGALYRRQGKFEAAE 496 //