hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18304600/chunk_1/iprscan-20080807-18304600.nocrc
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Query sequence: bm03987
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                 113.9    1.8e-29   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/5     267   300 ..     1    34 []    19.4     0.52
SM00028    2/5     309   342 ..     1    34 []    34.4  1.5e-05
SM00028    3/5     351   384 ..     1    34 []    25.8   0.0061
SM00028    4/5     393   426 ..     1    34 []    26.5   0.0036
SM00028    5/5     476   509 ..     1    34 []     7.8       66

Alignments of top-scoring domains:
SM00028: domain 1 of 5, from 267 to 300: score 19.4, E = 0.52
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a  l+ l+++y+ +++y++A + ++ AL++ ++    
     bm03987   267    ATMLNILALVYRDQNKYKDAANLLNDALAIREKT    300  

SM00028: domain 2 of 5, from 309 to 342: score 34.4, E = 1.5e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a +l+nl+++y k+g+y+eA+  +++ALe+ ++    
     bm03987   309    AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV    342  

SM00028: domain 3 of 5, from 351 to 384: score 25.8, E = 0.0061
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l+nl++++ ++g+y+e + yy++ALe+  +    
     bm03987   351    AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK    384  

SM00028: domain 4 of 5, from 393 to 426: score 26.5, E = 0.0036
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a++ +nl+ +ylk+g++++A+  y++ L+ + +    
     bm03987   393    AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER    426  

SM00028: domain 5 of 5, from 476 to 509: score 7.8, E = 66
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        +l+nlG +y+++g+++ A+   e A++   +    
     bm03987   476    TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG    509  

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