hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18363102/chunk_1/iprscan-20080807-18363102.nocrc
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Query sequence: bm03991
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00928.11.ls Adaptor complexes medium subunit family   431.1   1.4e-126   1
PF00928.11.fs Adaptor complexes medium subunit family   429.2   5.1e-126   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00928.11.fs   1/1     188   465 ..     1   325 []   429.2 5.1e-126
PF00928.11.ls   1/1     188   465 ..     1   325 []   431.1 1.4e-126

Alignments of top-scoring domains:
PF00928.11.fs: domain 1 of 1, from 188 to 465: score 429.2, E = 5.1e-126
                   *->vpwrpegikykkNEvflDViErvsvl............vdkdGglln
                      v+wr+egiky+kNEvflDViE+v++l++ ++ +  +++v+++G++l+
     bm03991   188    VSWRSEGIKYRKNEVFLDVIESVNLLgkypgvgwlghtVSANGNVLR 234  

                   sevqGtidckcfLsGmPeltlgLNdkllikkegsrgysiaesngsdGvnl
                   se+ G i++++fLsGmPel+lgLNdk+l++ +g+++  +           
     bm03991   235 SEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS----------- 273  

                   skpkvngsieldDvsFHpCVrlseFeservIsFiPPDGCeFeLMrYRiii
                           +el+Dv+FH+CVrls+Fe++r+IsFiPPDG eFeLM+YR+  
     bm03991   274 --------VELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYRL-- 312  

                   LwrmaseenanavklPfkvnpqvtenpsvgrievtvklrsdfksdkltae
                        +++    vk+ +++++ +++ +s +rie+++k++s+fk+ ++ta+
     bm03991   313 -----NTH----VKPLIWIESVIEK-HSHSRIEYMIKAKSQFKR-RSTAN 351  

                   nVvIsiPvPkgWikqvsspvlevnsdGdqkakYdpeenaLvWsIkkipgg
                   nV+I+iPvP +    ++sp++++ + G  ++k  pe++ +vWsIk++pgg
     bm03991   352 NVEIHIPVPND----ADSPKFKT-TVG--SVKWVPENSEIVWSIKSFPGG 394  

                   kehtLsnkigelelsstsevpekdwlskensfpplyisveFsipgftaSG
                   ke+ ++   +++ l+s    ++k+       +pp  isv+F+ip+ft+SG
     bm03991   395 KEYLMR---AHFGLPSVEA-EDKE------GKPP--ISVKFEIPYFTTSG 432  

                   ldpqVrslkvsepknycsnykpyKWVRYvTksgtsyqvRi<-*
                   +  qVr+lk++e k   s+y++ +WVRY+T+ g +yq R+   
     bm03991   433 I--QVRYLKIIE-K---SGYQALPWVRYITQNG-DYQLRT    465  

PF00928.11.ls: domain 1 of 1, from 188 to 465: score 431.1, E = 1.4e-126
                   *->vpwrpegikykkNEvflDViErvsvl............vdkdGglln
                      v+wr+egiky+kNEvflDViE+v++l++ ++ +  +++v+++G++l+
     bm03991   188    VSWRSEGIKYRKNEVFLDVIESVNLLgkypgvgwlghtVSANGNVLR 234  

                   sevqGtidckcfLsGmPeltlgLNdkllikkegsrgysiaesngsdGvnl
                   se+ G i++++fLsGmPel+lgLNdk+l++ +g+++  +           
     bm03991   235 SEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKS----------- 273  

                   skpkvngsieldDvsFHpCVrlseFeservIsFiPPDGCeFeLMrYRiii
                           +el+Dv+FH+CVrls+Fe++r+IsFiPPDG eFeLM+YR+  
     bm03991   274 --------VELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYRL-- 312  

                   LwrmaseenanavklPfkvnpqvtenpsvgrievtvklrsdfksdkltae
                        +++    vk+ +++++ +++ +s +rie+++k++s+fk+ ++ta+
     bm03991   313 -----NTH----VKPLIWIESVIEK-HSHSRIEYMIKAKSQFKR-RSTAN 351  

                   nVvIsiPvPkgWikqvsspvlevnsdGdqkakYdpeenaLvWsIkkipgg
                   nV+I+iPvP +    ++sp++++ + G  ++k  pe++ +vWsIk++pgg
     bm03991   352 NVEIHIPVPND----ADSPKFKT-TVG--SVKWVPENSEIVWSIKSFPGG 394  

                   kehtLsnkigelelsstsevpekdwlskensfpplyisveFsipgftaSG
                   ke+ ++   +++ l+s    ++k+       +pp  isv+F+ip+ft+SG
     bm03991   395 KEYLMR---AHFGLPSVEA-EDKE------GKPP--ISVKFEIPYFTTSG 432  

                   ldpqVrslkvsepknycsnykpyKWVRYvTksgtsyqvRi<-*
                   +  qVr+lk++e k   s+y++ +WVRY+T+ g +yq R+   
     bm03991   433 I--QVRYLKIIE-K---SGYQALPWVRYITQNG-DYQLRT    465  

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