# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm04001.fasta.nr -Q bm04001.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm04001, 403 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6798376 sequences Expectation_n fit: rho(ln(x))= 6.4600+/-0.000209; mu= 5.1859+/- 0.012 mean_var=143.9795+/-27.226, 0's: 36 Z-trim: 133 B-trim: 0 in 0/68 Lambda= 0.106887 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|15277908|gb|AAH12942.1| Cysteine conjugate-beta ( 390) 2734 432.9 5e-119 gi|82802769|gb|ABB92435.1| RBM1 [Homo sapiens] ( 384) 2691 426.3 4.9e-117 gi|82802771|gb|ABB92436.1| RBM1 [Pan troglodytes] ( 385) 2679 424.5 1.8e-116 gi|82802777|gb|ABB92439.1| RBM1 [Hylobates lar] ( 385) 2665 422.3 7.9e-116 gi|82802775|gb|ABB92438.1| RBM1 [Pongo pygmaeus] ( 385) 2655 420.8 2.3e-115 gi|82802779|gb|ABB92440.1| RBM1 [Cercopithecus sab ( 385) 2618 415.1 1.2e-113 gi|23503093|sp|P38159.3|HNRPG_HUMAN Heterogeneous ( 391) 2587 410.3 3.3e-112 gi|67969238|dbj|BAE00972.1| unnamed protein produc ( 391) 2583 409.7 5.1e-112 gi|119919689|ref|XP_880704.2| PREDICTED: similar t ( 391) 2580 409.2 7.1e-112 gi|3256007|emb|CAA80599.1| hnRNP G protein [Homo s ( 391) 2576 408.6 1.1e-111 gi|194044962|ref|XP_001927651.1| PREDICTED: simila ( 390) 2567 407.2 2.8e-111 gi|5579011|emb|CAB51362.1| heterogeneous nuclear r ( 391) 2551 404.7 1.6e-110 gi|15030328|gb|AAH11441.1| Rbmxrt protein [Mus mus ( 388) 2547 404.1 2.4e-110 gi|148678911|gb|EDL10858.1| mCG7984 [Mus musculus] ( 388) 2543 403.5 3.7e-110 gi|71152131|sp|P84586|HNRPG_RAT Heterogeneous nucl ( 388) 2536 402.4 7.8e-110 gi|66910650|gb|AAH97479.1| RNA binding motif prote ( 390) 2528 401.2 1.8e-109 gi|3914804|sp|O35479|HNRPG_MOUSE Heterogeneous nuc ( 388) 2521 400.1 3.9e-109 gi|149410923|ref|XP_001510789.1| PREDICTED: simila ( 394) 2495 396.1 6.3e-108 gi|109471751|ref|XP_001058360.1| PREDICTED: simila ( 446) 2476 393.2 5.2e-107 gi|109473135|ref|XP_001056767.1| PREDICTED: simila ( 441) 2401 381.7 1.6e-103 gi|126342495|ref|XP_001362154.1| PREDICTED: simila ( 394) 2394 380.5 3.1e-103 gi|4104336|gb|AAD01997.1| heterogeneous nuclear ri ( 394) 2384 379.0 8.9e-103 gi|542850|pir||S41766 heterogeneous nuclear ribonu ( 437) 2382 378.7 1.2e-102 gi|4098582|gb|AAD00328.1| RBM1 [Sminthopsis macrou ( 390) 2331 370.8 2.6e-100 gi|53130710|emb|CAG31684.1| hypothetical protein [ ( 385) 2285 363.7 3.5e-98 gi|21755396|dbj|BAC04674.1| unnamed protein produc ( 378) 2241 356.9 3.8e-96 gi|126325323|ref|XP_001367196.1| PREDICTED: simila ( 388) 2197 350.1 4.2e-94 gi|73990618|ref|XP_853786.1| PREDICTED: similar to ( 588) 1976 316.2 1e-83 gi|74008539|ref|XP_866389.1| PREDICTED: similar to ( 289) 1958 313.2 4.3e-83 gi|74008543|ref|XP_866411.1| PREDICTED: similar to ( 296) 1958 313.2 4.4e-83 gi|123219029|emb|CAM22441.1| RNA binding motif pro ( 301) 1923 307.8 1.9e-81 gi|149015800|gb|EDL75124.1| similar to heterogeneo ( 289) 1922 307.6 2e-81 gi|5579009|emb|CAB51361.1| heterogeneous nuclear r ( 289) 1922 307.6 2e-81 gi|149015798|gb|EDL75122.1| similar to heterogeneo ( 306) 1922 307.6 2.1e-81 gi|12838734|dbj|BAB24311.1| unnamed protein produc ( 385) 1884 301.9 1.4e-79 gi|109892459|sp|Q29RT0|HNRPG_BOVIN Heterogeneous n ( 396) 1860 298.2 1.9e-78 gi|75076898|sp|Q4R813.1|HNRGT_MACFA RNA-binding mo ( 394) 1796 288.3 1.8e-75 gi|55635561|ref|XP_521823.1| PREDICTED: similar to ( 392) 1789 287.2 3.7e-75 gi|108744011|gb|ABG02278.1| heterogeneous nuclear ( 391) 1788 287.1 4.1e-75 gi|153252068|ref|NP_055284.3| testes-specific hete ( 392) 1785 286.6 5.7e-75 gi|74754395|sp|O75526.2|HNRGT_HUMAN RNA-binding mo ( 392) 1784 286.5 6.3e-75 gi|158257974|dbj|BAF84960.1| unnamed protein produ ( 392) 1777 285.4 1.3e-74 gi|35505506|gb|AAH57796.1| RNA binding motif prote ( 392) 1769 284.1 3.1e-74 gi|74008545|ref|XP_866424.1| PREDICTED: similar to ( 263) 1762 282.9 5e-74 gi|47225325|emb|CAG09825.1| unnamed protein produc ( 391) 1763 283.2 6e-74 gi|148710224|gb|EDL42170.1| RNA binding motif prot ( 263) 1740 279.5 5.3e-73 gi|8927581|gb|AAF82129.1|AF279289_1 testes-specifi ( 386) 1741 279.8 6.2e-73 gi|148710227|gb|EDL42173.1| RNA binding motif prot ( 271) 1736 278.9 8.3e-73 gi|193787171|dbj|BAG52377.1| unnamed protein produ ( 256) 1710 274.9 1.3e-71 gi|149015801|gb|EDL75125.1| similar to heterogeneo ( 255) 1665 267.9 1.6e-69 >>gi|15277908|gb|AAH12942.1| Cysteine conjugate-beta lya (390 aa) initn: 2734 init1: 2734 opt: 2734 Z-score: 2292.1 bits: 432.9 E(): 5e-119 Smith-Waterman score: 2734; 100.000% identity (100.000% similar) in 390 aa overlap (14-403:1-390) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|152 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 360 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERG 290 300 310 320 330 340 370 380 390 400 bm0400 LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY ::::::::::::::::::::::::::::::::::::::::::: gi|152 LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 350 360 370 380 390 >>gi|82802769|gb|ABB92435.1| RBM1 [Homo sapiens] (384 aa) initn: 2691 init1: 2691 opt: 2691 Z-score: 2256.3 bits: 426.3 E(): 4.9e-117 Smith-Waterman score: 2691; 100.000% identity (100.000% similar) in 384 aa overlap (14-397:1-384) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|828 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 360 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERG 290 300 310 320 330 340 370 380 390 400 bm0400 LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY ::::::::::::::::::::::::::::::::::::: gi|828 LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRG 350 360 370 380 >>gi|82802771|gb|ABB92436.1| RBM1 [Pan troglodytes] (385 aa) initn: 2359 init1: 2359 opt: 2679 Z-score: 2246.3 bits: 424.5 E(): 1.8e-116 Smith-Waterman score: 2679; 99.740% identity (99.740% similar) in 385 aa overlap (14-397:1-385) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|828 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQER :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|828 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGCDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::::::::::::::::::::::::::::::::::: gi|828 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRG 350 360 370 380 >>gi|82802777|gb|ABB92439.1| RBM1 [Hylobates lar] (385 aa) initn: 2345 init1: 2345 opt: 2665 Z-score: 2234.6 bits: 422.3 E(): 7.9e-116 Smith-Waterman score: 2665; 99.221% identity (99.481% similar) in 385 aa overlap (14-397:1-385) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|828 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQER :::::::: ::::::::::::::::::::::::::.:::::::::::::: ::::::::: gi|828 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGGRDSYSSSRSDLYSSGCDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::::::::::::::::::::::::::::::::::: gi|828 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRG 350 360 370 380 >>gi|82802775|gb|ABB92438.1| RBM1 [Pongo pygmaeus] (385 aa) initn: 2346 init1: 2346 opt: 2655 Z-score: 2226.3 bits: 420.8 E(): 2.3e-115 Smith-Waterman score: 2655; 98.961% identity (99.221% similar) in 385 aa overlap (14-397:1-385) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|828 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|828 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPN 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQER :::::::: ::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|828 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGCDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY ::::::::::::::::::::::::::::: :::::::: gi|828 GLPPSVERGYPSSRDSYSSSSRGAPRGAGAGGSRSDRG 350 360 370 380 >>gi|82802779|gb|ABB92440.1| RBM1 [Cercopithecus sabaeus (385 aa) initn: 2309 init1: 2309 opt: 2618 Z-score: 2195.4 bits: 415.1 E(): 1.2e-113 Smith-Waterman score: 2618; 97.662% identity (98.442% similar) in 385 aa overlap (14-397:1-385) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK ::::::::::::::::::::::::::::::::::::::::::::::: gi|828 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :: ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: gi|828 GFRAGRGGSGGTRGPPSRGGHMDDGGYSMHFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|828 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLYPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|828 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQER :::::::: :::: ::::::::::::::::::::::::.::::::::::: ::::::::: gi|828 YGNSRSAPPTRGPRPSYGGSSRYDDYSSSRDGYGGSRDNYSSSRSDLYSSGCDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::::::::: ::::::::::::::.:::::::::: gi|828 GLPPSVERGYPSPRDSYSSSSRGAPRGGGPGGSRSDRG 350 360 370 380 >>gi|23503093|sp|P38159.3|HNRPG_HUMAN Heterogeneous nucl (391 aa) initn: 2274 init1: 2274 opt: 2587 Z-score: 2169.5 bits: 410.3 E(): 3.3e-112 Smith-Waterman score: 2587; 95.141% identity (97.442% similar) in 391 aa overlap (14-403:1-391) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK :::::::::::::::::::::::::.:::::::::::::.::::::: gi|235 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR ::::::::::::::::::::::::::::::::::::::::::: ::.::::::::::::: gi|235 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :. .::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|235 GLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :: ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|235 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|235 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQER :::::::: ::::::::::::::::::::::::::::::::::::::::: :::::::: gi|235 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::.::::: ::::::::::::::.: :::::::::::::: gi|235 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 350 360 370 380 390 >>gi|67969238|dbj|BAE00972.1| unnamed protein product [M (391 aa) initn: 2274 init1: 2274 opt: 2583 Z-score: 2166.2 bits: 409.7 E(): 5.1e-112 Smith-Waterman score: 2583; 94.885% identity (97.442% similar) in 391 aa overlap (14-403:1-391) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK :::::::::::::::::::::::::.:::::::::::::.::::::: gi|679 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR ::::::::::::::::::::::::::::::::::::::::::: ::.::::::::::::: gi|679 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :. .::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|679 GLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :: ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|679 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|679 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQER :::::::: ::::::::::::::::::::::::::::::::::::::::: ::::::.: gi|679 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQDR 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::.::::: ::::::::::::::.: :::::::::::::: gi|679 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 350 360 370 380 390 >>gi|119919689|ref|XP_880704.2| PREDICTED: similar to RN (391 aa) initn: 2267 init1: 2267 opt: 2580 Z-score: 2163.7 bits: 409.2 E(): 7.1e-112 Smith-Waterman score: 2580; 94.885% identity (97.442% similar) in 391 aa overlap (14-403:1-391) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK :::::::::::::::::::::::::.:::::::::::::.::::::: gi|119 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR ::::::::::::::::::::::::::::::::::::::::::: ::.::::::::::::: gi|119 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :. .:::::::::::::.::::::::::::::::::::::::::::::::::: :::::: gi|119 GLRGGRGGSGGTRGPPSHGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :: ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|119 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|119 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQER :::::::: ::::::::::::::::::::::::::::::::::::::::: :::::::: gi|119 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::.::::: ::::::::::::::.: :::::::::::::: gi|119 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 350 360 370 380 390 >>gi|3256007|emb|CAA80599.1| hnRNP G protein [Homo sapie (391 aa) initn: 2263 init1: 2263 opt: 2576 Z-score: 2160.4 bits: 408.6 E(): 1.1e-111 Smith-Waterman score: 2576; 94.885% identity (97.187% similar) in 391 aa overlap (14-403:1-391) 10 20 30 40 50 60 bm0400 THCHPSDSPAKKKMVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNK :::::::::::::::::::::::::.:::::::::::::.::::::: gi|325 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 10 20 30 40 70 80 90 100 110 120 bm0400 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR ::::::::::::::::::::::::::::::::::::::::::: ::.::::::::::::: gi|325 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 50 60 70 80 90 100 130 140 150 160 170 180 bm0400 GFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAP :. .::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|325 GLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAP 110 120 130 140 150 160 190 200 210 220 230 240 bm0400 SGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS :: ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|325 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 170 180 190 200 210 220 250 260 270 280 290 300 bm0400 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES ::::::::::::::::::::::::::::::: :.:::::::::::::::::::::::::: gi|325 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSREYSDRDGYGRDRDYSDHPSGGSYRDSYES 230 240 250 260 270 280 310 320 330 340 350 bm0400 YGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQER :::::::: ::::::::::::::::::::::::::::::::::::::::: :::::::: gi|325 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQER 290 300 310 320 330 340 360 370 380 390 400 bm0400 GLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY :::::.::::: ::::::::::::::.: :::::::::::::: gi|325 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 350 360 370 380 390 403 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 18:40:00 2008 done: Thu Aug 7 18:42:28 2008 Total Scan time: 819.890 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]