hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18422919/chunk_1/iprscan-20080807-18422919.nocrc
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Query sequence: bm04001
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    113.9    4.2e-31   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    112.0    1.2e-30   1
PF08081.2.ls RBM1CTR (NUC064) family                        100.2    5.8e-27   1
PF08081.2.fs RBM1CTR (NUC064) family                         99.6    7.4e-27   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      23    94 ..     1    74 []   112.0  1.2e-30
PF00076.12.ls   1/1      23    94 ..     1    74 []   113.9  4.2e-31
PF08081.2.fs   1/2     186   230 ..     1    45 []    98.2  1.8e-26
PF08081.2.ls   1/1     186   230 ..     1    45 []   100.2  5.8e-27

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 23 to 94: score 112.0, E = 1.2e-30
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g+L+++t+e+ L++ F+k+G+i+++ +++D  ret++s+GfaFV
     bm04001    23    LFIGGLNTETNEKALETVFGKYGRIVEVLLIKD--RETNKSRGFAFV 67   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ dA++A + +nGk l+g+ ++v   
     bm04001    68 TFESPADAKDAARDMNGKSLDGKAIKV    94   

PF00076.12.ls: domain 1 of 1, from 23 to 94: score 113.9, E = 4.2e-31
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf+g+L+++t+e+ L++ F+k+G+i+++ +++D  ret++s+GfaFV
     bm04001    23    LFIGGLNTETNEKALETVFGKYGRIVEVLLIKD--RETNKSRGFAFV 67   

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ dA++A + +nGk l+g+ ++v   
     bm04001    68 TFESPADAKDAARDMNGKSLDGKAIKV    94   

PF08081.2.fs: domain 1 of 2, from 186 to 230: score 98.2, E = 1.8e-26
                   *->sssgmGgrgplSrgRDgYGgPPRReslpSRRDdylspRDDgYstk<-
                      sssgmGgr+plSrgRD+YGgPPRRe+lpSRRD+ylspRDDgYstk  
     bm04001   186    SSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK   230  

                   *
                    
     bm04001     -   -    

PF08081.2.ls: domain 1 of 1, from 186 to 230: score 100.2, E = 5.8e-27
                   *->sssgmGgrgplSrgRDgYGgPPRReslpSRRDdylspRDDgYstk<-
                      sssgmGgr+plSrgRD+YGgPPRRe+lpSRRD+ylspRDDgYstk  
     bm04001   186    SSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK   230  

                   *
                    
     bm04001     -   -    

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