hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18422919/chunk_1/iprscan-20080807-18422919.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm04001
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 109.4    4.2e-28   1
SM00361                                                  32.1    7.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00361    1/1      22    95 ..     1    91 []    32.1  7.4e-05
SM00360    1/1      22    95 ..     1   121 []   109.4  4.2e-28

Alignments of top-scoring domains:
SM00361: domain 1 of 1, from 22 to 95: score 32.1, E = 7.4e-05
                   *->lvlvnglvspeeakdEdferelseeeeyfgevgkinKivinkvtkrl
                       +++ gl ++e   +  +e++++    ++g +++++  + +++t   
     bm04001    22    KLFIGGL-NTETN-EKALETVFG----KYGRIVEVL-LIKDRET--- 58   

                   NayenhkrgsggvYitFFersEDAarAivdlnGryfdGRtlkae<-*
                       n +rg   +++tF e++ DA++A +d nG   dG+ +k e   
     bm04001    59 ----NKSRGF--AFVTF-ESPADAKDAARDMNGKSLDGKAIKVE    95   

SM00360: domain 1 of 1, from 22 to 95: score 109.4, E = 4.2e-28
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lf+g+L  + +++e+ L+ +F              +k+G +v+v +
     bm04001    22    KLFIGGL--NTETNEKALETVF--------------GKYGRIVEVLL 52   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++d++                     T+ks+GfaFV+Fe+++dA++A   
     bm04001    53 IKDRE---------------------TNKSRGFAFVTFESPADAKDA--A 79   

                   ealnaskGkeledgGrptlglrVe<-*
                   + +n   Gk l  +G+    ++Ve   
     bm04001    80 RDMN---GKSL--DGKA---IKVE    95   

//