hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00133296/chunk_1/iprscan-20090618-00133296.nocrc
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Query sequence: bm04087
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04487.3.fs CITED                                          553.4     6e-195   1
PF04487.3.ls CITED                                          555.4   5.4e-164   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04487.3.fs   1/1     116   346 .]     1   250 []   553.4   6e-195
PF04487.3.ls   1/1     116   346 .]     1   250 []   555.4 5.4e-164

Alignments of top-scoring domains:
PF04487.3.fs: domain 1 of 1, from 116 to 346: score 553.4, E = 6e-195
                   *->aqqelqsaafsaLlgkdraAvtllhYgGggmdaasgiRhalspGtka
                      +qq++q +af+aL+g      +++hYg+g+m+a+sgiRha++pGt++
     bm04087   116    QQQQPQ-HAFNALMG------EHIHYGAGNMNATSGIRHAMGPGTVN 155  

                   gGaPtsSlGqppPagsfngssfmkppsfspfptgqLpASMqLQKLNsQYq
                   gG+P+s+l   +Pa++fn+s+fm+pp++s  ++g+LpASMqLQKLN+QY+
     bm04087   156 GGHPPSAL---APAARFNNSQFMGPPVAS--QGGSLPASMQLQKLNNQYF 200  

                   ghaPYPHnHYvPDLHP.aGHqlnGtnQHFRDCNPKHsGGagtsnalggag
                   +h+PYPHnHY+PDLHP aGHq+nGtnQHFRDCNPKHsGG++t++++gg++
     bm04087   201 NHHPYPHNHYMPDLHPaAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSS 250  

                   lPggagpsqgrvpAppsqaGgpsslspaaGaqsPpglphvPapmLPpALn
                   +Pgg+g+s+g+       aG+++s+++++++++P++++hvPa+mLPp  n
     bm04087   251 TPGGSGSSSGGG------AGSSNSGGGSGSGNMPASVAHVPAAMLPP--N 292  

                   viDtDlIDEEVLmSLVlELGLDRikELPELwLGQNEFDFmsDFvSkqqpS
                   viDtD+IDEEVLmSLV+E+GLDRikELPELwLGQNEFDFm+DFv+kqqpS
     bm04087   293 VIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPS 342  

                   rVSC<-*
                   rVSC   
     bm04087   343 RVSC    346  

PF04487.3.ls: domain 1 of 1, from 116 to 346: score 555.4, E = 5.4e-164
                   *->aqqelqsaafsaLlgkdraAvtllhYgGggmdaasgiRhalspGtka
                      +qq++q +af+aL+g      +++hYg+g+m+a+sgiRha++pGt++
     bm04087   116    QQQQPQ-HAFNALMG------EHIHYGAGNMNATSGIRHAMGPGTVN 155  

                   gGaPtsSlGqppPagsfngssfmkppsfspfptgqLpASMqLQKLNsQYq
                   gG+P+s+l   +Pa++fn+s+fm+pp++s  ++g+LpASMqLQKLN+QY+
     bm04087   156 GGHPPSAL---APAARFNNSQFMGPPVAS--QGGSLPASMQLQKLNNQYF 200  

                   ghaPYPHnHYvPDLHP.aGHqlnGtnQHFRDCNPKHsGGagtsnalggag
                   +h+PYPHnHY+PDLHP aGHq+nGtnQHFRDCNPKHsGG++t++++gg++
     bm04087   201 NHHPYPHNHYMPDLHPaAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSS 250  

                   lPggagpsqgrvpAppsqaGgpsslspaaGaqsPpglphvPapmLPpALn
                   +Pgg+g+s+g+       aG+++s+++++++++P++++hvPa+mLPp  n
     bm04087   251 TPGGSGSSSGGG------AGSSNSGGGSGSGNMPASVAHVPAAMLPP--N 292  

                   viDtDlIDEEVLmSLVlELGLDRikELPELwLGQNEFDFmsDFvSkqqpS
                   viDtD+IDEEVLmSLV+E+GLDRikELPELwLGQNEFDFm+DFv+kqqpS
     bm04087   293 VIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPS 342  

                   rVSC<-*
                   rVSC   
     bm04087   343 RVSC    346  

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