hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-12542853/chunk_1/iprscan-20090416-12542853.nocrc
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Query sequence: bm04118
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01399.17.fs PCI domain                                      87.4    8.9e-24   1
PF01399.17.ls PCI domain                                      89.2    1.2e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1     290   395 ..     1   135 []    87.4  8.9e-24
PF01399.17.ls   1/1     290   395 ..     1   135 []    89.2  1.2e-23

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 290 to 395: score 87.4, E = 8.9e-24
                   *->payrdLleafysgd.lsdfeeiladhvmAKalkGwqkkeellldpgl
                      +++++++e++y + ++++ ++ l+++           ++ l +d +l
     bm04118   290    DPITEFVECLYVNFdFDGAQKKLREC-----------ESVLVNDFFL 325  

                   aekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgl
                             +led+ ++ r+  + ++++     ++++is+ +la +l++
     bm04118   326 VA--------CLEDFIENARLFIFETFCR-----IHQCISINMLADKLNM 362  

                   svvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   +       +e+E+++++lIr+ ++++kID++ g vv+     
     bm04118   363 TP------EEAERWIVNLIRNARLDAKIDSKLGHVVMGN    395  

PF01399.17.ls: domain 1 of 1, from 290 to 395: score 89.2, E = 1.2e-23
                   *->payrdLleafysgd.lsdfeeiladhvmAKalkGwqkkeellldpgl
                      +++++++e++y + ++++ ++ l+++           ++ l +d +l
     bm04118   290    DPITEFVECLYVNFdFDGAQKKLREC-----------ESVLVNDFFL 325  

                   aekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgl
                             +led+ ++ r+  + ++++     ++++is+ +la +l++
     bm04118   326 VA--------CLEDFIENARLFIFETFCR-----IHQCISINMLADKLNM 362  

                   svvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   +       +e+E+++++lIr+ ++++kID++ g vv+     
     bm04118   363 TP------EEAERWIVNLIRNARLDAKIDSKLGHVVMGN    395  

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