hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-12542853/chunk_1/iprscan-20090416-12542853.nocrc
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Query sequence: bm04118
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00088                                                  77.7    1.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00088    1/1     327   411 ..     1    92 []    77.7  1.4e-18

Alignments of top-scoring domains:
SM00088: domain 1 of 1, from 327 to 411: score 77.7, E = 1.4e-18
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                       + e++++++r+  + ++++++ ++is+ +la++l+++ +e +E+++
     bm04118   327    ACLEDFIENARLFIFETFCRIH-QCISINMLADKLNMTPEE-AERWI 371  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   +++Ir+ +++akID++ g+v++++++      ++ +q  e+ k+l   
     bm04118   372 VNLIRNARLDAKIDSKLGHVVMGNNAV-----SPYQQVIEKTKSL    411  

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