# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm04184.fasta.nr -Q bm04184.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm04184, 476 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984843 sequences Expectation_n fit: rho(ln(x))= 4.9783+/-0.000186; mu= 12.5293+/- 0.010 mean_var=76.9453+/-15.713, 0's: 28 Z-trim: 31 B-trim: 6042 in 2/65 Lambda= 0.146212 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|109018048|ref|XP_001087264.1| PREDICTED: presen ( 654) 3065 656.2 8.4e-186 gi|55664430|emb|CAH73111.1| presenilin 2 (Alzheime ( 481) 3024 647.4 2.7e-183 gi|119590202|gb|EAW69796.1| presenilin 2 (Alzheime ( 480) 3006 643.6 3.7e-182 gi|1709858|sp|P49810.1|PSN2_HUMAN RecName: Full=Pr ( 448) 2979 637.9 1.8e-180 gi|30584235|gb|AAP36366.1| Homo sapiens presenilin ( 449) 2979 637.9 1.8e-180 gi|75042205|sp|Q5RCN9.1|PSN2_PONAB RecName: Full=P ( 448) 2973 636.6 4.4e-180 gi|114572972|ref|XP_514247.2| PREDICTED: presenili ( 448) 2968 635.5 9.2e-180 gi|951203|gb|AAB59557.1| STM-2 gene product ( 448) 2968 635.5 9.2e-180 gi|119590206|gb|EAW69800.1| presenilin 2 (Alzheime ( 447) 2961 634.1 2.6e-179 gi|122143204|sp|Q0MS45.1|PSN2_PIG RecName: Full=Pr ( 448) 2916 624.6 1.8e-176 gi|115502442|sp|Q9XT96.2|PSN2_BOVIN RecName: Full= ( 449) 2900 621.2 1.9e-175 gi|73961465|ref|XP_547503.2| PREDICTED: similar to ( 717) 2900 621.4 2.7e-175 gi|5070118|gb|AAD39024.1|AF038937_1 presenilin 2 [ ( 449) 2894 619.9 4.6e-175 gi|149748722|ref|XP_001489764.1| PREDICTED: simila ( 448) 2879 616.8 4.1e-174 gi|14714537|gb|AAH10403.1| Psen2 protein [Mus musc ( 448) 2866 614.0 2.8e-173 gi|37154738|sp|Q61144.3|PSN2_MOUSE RecName: Full=P ( 448) 2856 611.9 1.2e-172 gi|1710119|gb|AAC52937.1| formerly known as STM2; ( 448) 2851 610.9 2.5e-172 gi|2724098|gb|AAB92660.1| presenilin 2 [Mus muscul ( 447) 2848 610.2 3.8e-172 gi|6174932|sp|O88777.2|PSN2_RAT RecName: Full=Pres ( 448) 2842 609.0 9.2e-172 gi|3378675|emb|CAA67663.1| presenilin-2 [Rattus no ( 448) 2839 608.3 1.4e-171 gi|114572974|ref|XP_001142009.1| PREDICTED: presen ( 442) 2830 606.4 5.3e-171 gi|6093850|sp|P79801.1|PSN2_MICMU RecName: Full=Pr ( 445) 2830 606.4 5.3e-171 gi|1079576|gb|AAC50290.1| seven trans-membrane dom ( 442) 2827 605.8 8.2e-171 gi|2190043|dbj|BAA20406.1| presenilin-2 [Rattus no ( 448) 2825 605.4 1.1e-170 gi|16303806|gb|AAL16812.1|AF416718_2 presenilin 2 ( 390) 2588 555.3 1.1e-155 gi|194375245|dbj|BAG62735.1| unnamed protein produ ( 359) 2361 507.4 2.7e-141 gi|149641483|ref|XP_001514754.1| PREDICTED: simila ( 455) 2301 494.9 2.1e-137 gi|224047283|ref|XP_002197681.1| PREDICTED: presen ( 458) 2250 484.1 3.7e-134 gi|126307152|ref|XP_001377065.1| PREDICTED: simila ( 426) 2211 475.8 1e-131 gi|45444679|gb|AAS64564.1| presenilin 2 [Gallus ga ( 456) 2194 472.3 1.3e-130 gi|89272004|emb|CAJ82197.1| presenilin 2 (Alzheime ( 451) 2084 449.1 1.3e-123 gi|82108142|sp|Q90X07.1|PSN2_CHICK RecName: Full=P ( 451) 2075 447.2 4.7e-123 gi|6093851|sp|O12977.1|PSN2_XENLA RecName: Full=Pr ( 449) 2069 445.9 1.1e-122 gi|209154090|gb|ACI33277.1| Presenilin-2 [Salmo sa ( 447) 2022 436.0 1.1e-119 gi|37082570|sp|Q90ZE4.2|PSN2_DANRE RecName: Full=P ( 441) 2003 432.0 1.7e-118 gi|14388621|gb|AAK61828.1|AF178539_1 presenilin-2 ( 441) 2000 431.4 2.7e-118 gi|41107587|gb|AAH65382.1| Presenilin2 [Danio reri ( 441) 1997 430.7 4.1e-118 gi|109084224|ref|XP_001088094.1| PREDICTED: presen ( 436) 1900 410.3 5.9e-112 gi|109084222|ref|XP_001088205.1| PREDICTED: presen ( 436) 1883 406.7 7.1e-111 gi|109084226|ref|XP_001087969.1| PREDICTED: presen ( 438) 1878 405.6 1.5e-110 gi|114653794|ref|XP_001149972.1| PREDICTED: presen ( 443) 1865 402.9 1e-109 gi|12852721|dbj|BAB29514.1| unnamed protein produc ( 332) 1855 400.7 3.5e-109 gi|114653796|ref|XP_001149914.1| PREDICTED: presen ( 445) 1843 398.2 2.5e-108 gi|115638469|ref|XP_001178622.1| PREDICTED: simila ( 480) 1672 362.2 1.9e-97 gi|58700691|gb|AAW81051.1| presenilin 2 [Mus muscu ( 260) 1668 361.1 2.2e-97 gi|224051231|ref|XP_002200426.1| PREDICTED: presen ( 467) 1330 290.0 9.7e-76 gi|126282375|ref|XP_001368221.1| PREDICTED: simila ( 471) 1325 289.0 2e-75 gi|127798674|gb|AAH64246.2| Presenilin 1 [Xenopus ( 433) 1318 287.5 5.3e-75 gi|97180304|sp|Q4JIM4.1|PSN1_CHICK RecName: Full=P ( 468) 1317 287.3 6.5e-75 gi|6093849|sp|O12976.1|PSN1_XENLA RecName: Full=Pr ( 433) 1314 286.6 9.5e-75 >>gi|109018048|ref|XP_001087264.1| PREDICTED: presenilin (654 aa) initn: 3065 init1: 3065 opt: 3065 Z-score: 3493.1 bits: 656.2 E(): 8.4e-186 Smith-Waterman score: 3065; 97.674% identity (98.943% similar) in 473 aa overlap (4-476:182-654) 10 20 30 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFM ...: :.: .::::::: :.: :::::::: gi|109 NERTLPGPQAFLSGTGLLEPGIVIIHLTCWEEEPVVQDPNLSAAPSVCGTSGGRAMLTFM 160 170 180 190 200 210 40 50 60 70 80 90 bm0418 ASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVC :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|109 ASDSEEEVCDERTSLMSAESPTPRSCQEGRQGPEDGENIAQWRSQENEEDGEEDPDRYVC 220 230 240 250 260 270 100 110 120 130 140 150 bm0418 SGVPGRPPGLEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SGVPGRPPGLEEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFT 280 290 300 310 320 330 160 170 180 190 200 210 bm0418 EDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTY 340 350 360 370 380 390 220 230 240 250 260 270 bm0418 IYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IYLGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIK 400 410 420 430 440 450 280 290 300 310 320 330 bm0418 YLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YLPEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMA 460 470 480 490 500 510 340 350 360 370 380 390 bm0418 KLDPSSQGALQLPYDPEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KLDPSSQGALQLPYDPEMEEDSYDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLG 520 530 540 550 560 570 400 410 420 430 440 450 bm0418 DFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLI 580 590 600 610 620 630 460 470 bm0418 FYFSTDNLVRPFMDTLASHQLYI ::::::::::::::::::::::: gi|109 FYFSTDNLVRPFMDTLASHQLYI 640 650 >>gi|55664430|emb|CAH73111.1| presenilin 2 (Alzheimer di (481 aa) initn: 3024 init1: 3024 opt: 3024 Z-score: 3448.1 bits: 647.4 E(): 2.7e-183 Smith-Waterman score: 3024; 100.000% identity (100.000% similar) in 455 aa overlap (22-476:27-481) 10 20 30 40 50 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPT :::::::::::::::::::::::::::::::::: gi|556 MLAGTVRFARHCLKFFPAQKPACVDFGASRGRAMLTFMASDSEEEVCDERTSLMSAESPT 10 20 30 40 50 60 60 70 80 90 100 110 bm0418 PRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 PRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKH 70 80 90 100 110 120 120 130 140 150 160 170 bm0418 VIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMIS 130 140 150 160 170 180 180 190 200 210 220 230 bm0418 VIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLT 190 200 210 220 230 240 240 250 260 270 280 290 bm0418 VWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAV 250 260 270 280 290 300 300 310 320 330 340 350 bm0418 LCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 LCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDS 310 320 330 340 350 360 360 370 380 390 400 410 bm0418 YDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 YDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNT 370 380 390 400 410 420 420 430 440 450 460 470 bm0418 TLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 TLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLY 430 440 450 460 470 480 bm0418 I : gi|556 I >>gi|119590202|gb|EAW69796.1| presenilin 2 (Alzheimer di (480 aa) initn: 2209 init1: 2209 opt: 3006 Z-score: 3427.6 bits: 643.6 E(): 3.7e-182 Smith-Waterman score: 3006; 99.780% identity (99.780% similar) in 455 aa overlap (22-476:27-480) 10 20 30 40 50 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPT :::::::::::::::::::::::::::::::::: gi|119 MLAGTVRFARHCLKFFPAQKPACVDFGASRGRAMLTFMASDSEEEVCDERTSLMSAESPT 10 20 30 40 50 60 60 70 80 90 100 110 bm0418 PRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKH 70 80 90 100 110 120 120 130 140 150 160 170 bm0418 VIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMIS 130 140 150 160 170 180 180 190 200 210 220 230 bm0418 VIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLT 190 200 210 220 230 240 240 250 260 270 280 290 bm0418 VWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAV 250 260 270 280 290 300 300 310 320 330 340 350 bm0418 LCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: gi|119 LCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEME-DS 310 320 330 340 350 360 370 380 390 400 410 bm0418 YDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YDSFGEPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNT 360 370 380 390 400 410 420 430 440 450 460 470 bm0418 TLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLACFVAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLY 420 430 440 450 460 470 bm0418 I : gi|119 I 480 >>gi|1709858|sp|P49810.1|PSN2_HUMAN RecName: Full=Presen (448 aa) initn: 2979 init1: 2979 opt: 2979 Z-score: 3397.2 bits: 637.9 E(): 1.8e-180 Smith-Waterman score: 2979; 100.000% identity (100.000% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|170 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 >>gi|30584235|gb|AAP36366.1| Homo sapiens presenilin 2 ( (449 aa) initn: 2979 init1: 2979 opt: 2979 Z-score: 3397.1 bits: 637.9 E(): 1.8e-180 Smith-Waterman score: 2979; 100.000% identity (100.000% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|305 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYIL 400 410 420 430 440 >>gi|75042205|sp|Q5RCN9.1|PSN2_PONAB RecName: Full=Prese (448 aa) initn: 2973 init1: 2973 opt: 2973 Z-score: 3390.3 bits: 636.6 E(): 4.4e-180 Smith-Waterman score: 2973; 99.554% identity (100.000% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|750 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|750 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYICSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|750 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVAM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 >>gi|114572972|ref|XP_514247.2| PREDICTED: presenilin 2 (448 aa) initn: 2968 init1: 2968 opt: 2968 Z-score: 3384.6 bits: 635.5 E(): 9.2e-180 Smith-Waterman score: 2968; 99.777% identity (99.777% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|114 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|114 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTASVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 >>gi|951203|gb|AAB59557.1| STM-2 gene product (448 aa) initn: 2968 init1: 2968 opt: 2968 Z-score: 3384.6 bits: 635.5 E(): 9.2e-180 Smith-Waterman score: 2968; 99.777% identity (99.777% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|951 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|951 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTTFTEDTPSVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|951 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 >>gi|119590206|gb|EAW69800.1| presenilin 2 (Alzheimer di (447 aa) initn: 2164 init1: 2164 opt: 2961 Z-score: 3376.7 bits: 634.1 E(): 2.6e-179 Smith-Waterman score: 2961; 99.777% identity (99.777% similar) in 448 aa overlap (29-476:1-447) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|119 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|119 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEME-DSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 >>gi|122143204|sp|Q0MS45.1|PSN2_PIG RecName: Full=Presen (448 aa) initn: 2916 init1: 2916 opt: 2916 Z-score: 3325.3 bits: 624.6 E(): 1.8e-176 Smith-Waterman score: 2916; 97.991% identity (99.107% similar) in 448 aa overlap (29-476:1-448) 10 20 30 40 50 60 bm0418 PAEKKKPSVRDSDLSAAPSVRGASRGRAMLTFMASDSEEEVCDERTSLMSAESPTPRSCQ :::::::::::::::::::::::::::::::: gi|122 MLTFMASDSEEEVCDERTSLMSAESPTPRSCQ 10 20 30 70 80 90 100 110 120 bm0418 EGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF ::::: ::::..::::::..::: :::::::::::::::::::::::::::::::::::: gi|122 EGRQGLEDGESAAQWRSQDSEEDHEEDPDRYVCSGVPGRPPGLEEELTLKYGAKHVIMLF 40 50 60 70 80 90 130 140 150 160 170 180 bm0418 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 VPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTPSVGQRLLNSVLNTLIMISVIVVM 100 110 120 130 140 150 190 200 210 220 230 240 bm0418 TIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLLLTVWNFG ::::::::::::::::::::: ::::::::::::::::::::::::::::::.::::::: gi|122 TIFLVVLYKYRCYKFIHGWLITSSLMLLFLFTYIYLGEVLKTYNVAMDYPTLFLTVWNFG 160 170 180 190 200 210 250 260 270 280 290 300 bm0418 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 AVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDLVAVLCPKG 220 230 240 250 260 270 310 320 330 340 350 360 bm0418 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 PLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDPSSQGALQLPYDPEMEEDSYDSFG 280 290 300 310 320 330 370 380 390 400 410 420 bm0418 EPSYPEVFEPPLTGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|122 EPSYPEVFEPPLPGYPGEELEEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACF 340 350 360 370 380 390 430 440 450 460 470 bm0418 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 VAILIGLCLTLLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 400 410 420 430 440 476 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 00:16:41 2009 done: Thu Jun 18 00:19:47 2009 Total Scan time: 1132.420 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]