hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00194834/chunk_1/iprscan-20090618-00194834.nocrc
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Query sequence: bm04184
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF01080.8.ls Presenilin                                   847.4   6.5e-252   1
PF01080.8.fs Presenilin                                   845.6   2.3e-251   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF01080.8.fs   1/1     104   467 ..     1   475 []   845.6 2.3e-251
PF01080.8.ls   1/1     104   467 ..     1   475 []   847.4 6.5e-252

Alignments of top-scoring domains:
PF01080.8.fs: domain 1 of 1, from 104 to 467: score 845.6, E = 2.3e-251
                   *->eeelklkYgakhvimlfvPVslCMllVvatiksvsfyeqndglkllY
                      eeel+lkYgakhvimlfvPV+lCM++Vvatiksv+fy++++g +l+Y
     bm04184   104    EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNG-QLIY 149  

                   tpFhsdtptvgqklldSllNtlilIsVlvvmTfLlvvlYkyrFYKiIhgW
                   tpF++dtp+vgq+ll+S+lNtli+IsV+vvmT++lvvlYkyr+YK+IhgW
     bm04184   150 TPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGW 199  

                   LilSSlllLFlfsviyLqevfkaynDQDDNNQvpmdyptvllliwnFGvv
                   Li+SSl+lLFlf++iyL+ev+k+yn       v+mdypt+ll +wnFG+v
     bm04184   200 LIMSSLMLLFLFTYIYLGEVLKTYN-------VAMDYPTLLLTVWNFGAV 242  

                   GmmciHWkgpLrLqQfYLItisaLmAlvfikyLPeWTaWfvLaaISvWDL
                   Gm+ciHWkgpL+LqQ+YLI+isaLmAlvfikyLPeW+aW++L+aISv+DL
     bm04184   243 GMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDL 292  

                   VAVLtPkGPLrmLVETAqeRnepiFPAliYSStvvvltvgsnqeetnegt
                   VAVL+PkGPLrmLVETAqeRnepiFPAliYSS+ +v+tvg        ++
     bm04184   293 VAVLCPKGPLRMLVETAQERNEPIFPALIYSSA-MVWTVG--------MA 333  

                   psterrtskstIEYyTkReaQDDEFYQKIRQRrsaanPdsaptshstlVE
                   +      ++                                p+s+++l  
     bm04184   334 K------LD--------------------------------PSSQGAL-- 343  

                   AEPSpielkekssteeesddesdsseteGmPLvsgsSNLsssdssttvsq
                         +l++   ++e+++d++ds++++     s                
     bm04184   344 ------QLPY---DPEMEEDSYDSFGEP-----S---------------- 363  

                   sdsllaphrteeiareqpevqsnslpsNekreeTAaDalhPdGeeErgvk
                        +p   e+++ +  +++      +e+ ee          eeErgvk
     bm04184   364 -----YP---EVFEPPLTGYP------GEELEE----------EEERGVK 389  

                   LGLGDFiFYSvLvGkAsatasGdwnTtIACFVaILiGLclTLlllavfkk
                   LGLGDFiFYSvLvGkA+at+sGdwnTt+ACFVaILiGLclTLlllavfkk
     bm04184   390 LGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKK 439  

                   ALPALPisitfGlIFYFstdilvtPFmd<-*
                   ALPALPisitfGlIFYFstd+lv+PFmd   
     bm04184   440 ALPALPISITFGLIFYFSTDNLVRPFMD    467  

PF01080.8.ls: domain 1 of 1, from 104 to 467: score 847.4, E = 6.5e-252
                   *->eeelklkYgakhvimlfvPVslCMllVvatiksvsfyeqndglkllY
                      eeel+lkYgakhvimlfvPV+lCM++Vvatiksv+fy++++g +l+Y
     bm04184   104    EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNG-QLIY 149  

                   tpFhsdtptvgqklldSllNtlilIsVlvvmTfLlvvlYkyrFYKiIhgW
                   tpF++dtp+vgq+ll+S+lNtli+IsV+vvmT++lvvlYkyr+YK+IhgW
     bm04184   150 TPFTEDTPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGW 199  

                   LilSSlllLFlfsviyLqevfkaynDQDDNNQvpmdyptvllliwnFGvv
                   Li+SSl+lLFlf++iyL+ev+k+yn       v+mdypt+ll +wnFG+v
     bm04184   200 LIMSSLMLLFLFTYIYLGEVLKTYN-------VAMDYPTLLLTVWNFGAV 242  

                   GmmciHWkgpLrLqQfYLItisaLmAlvfikyLPeWTaWfvLaaISvWDL
                   Gm+ciHWkgpL+LqQ+YLI+isaLmAlvfikyLPeW+aW++L+aISv+DL
     bm04184   243 GMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPEWSAWVILGAISVYDL 292  

                   VAVLtPkGPLrmLVETAqeRnepiFPAliYSStvvvltvgsnqeetnegt
                   VAVL+PkGPLrmLVETAqeRnepiFPAliYSS+ +v+tvg        ++
     bm04184   293 VAVLCPKGPLRMLVETAQERNEPIFPALIYSSA-MVWTVG--------MA 333  

                   psterrtskstIEYyTkReaQDDEFYQKIRQRrsaanPdsaptshstlVE
                   +      ++                                p+s+++l  
     bm04184   334 K------LD--------------------------------PSSQGAL-- 343  

                   AEPSpielkekssteeesddesdsseteGmPLvsgsSNLsssdssttvsq
                         +l++   ++e+++d++ds++++     s                
     bm04184   344 ------QLPY---DPEMEEDSYDSFGEP-----S---------------- 363  

                   sdsllaphrteeiareqpevqsnslpsNekreeTAaDalhPdGeeErgvk
                        +p   e+++ +  +++      +e+ ee          eeErgvk
     bm04184   364 -----YP---EVFEPPLTGYP------GEELEE----------EEERGVK 389  

                   LGLGDFiFYSvLvGkAsatasGdwnTtIACFVaILiGLclTLlllavfkk
                   LGLGDFiFYSvLvGkA+at+sGdwnTt+ACFVaILiGLclTLlllavfkk
     bm04184   390 LGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLLLLAVFKK 439  

                   ALPALPisitfGlIFYFstdilvtPFmd<-*
                   ALPALPisitfGlIFYFstd+lv+PFmd   
     bm04184   440 ALPALPISITFGLIFYFSTDNLVRPFMD    467  

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