hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-18534909/chunk_1/iprscan-20080807-18534909.nocrc
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Query sequence: bm04221
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01603.10.fs Protein phosphatase 2A regulatory B subunit   1062.7          0   1
PF01603.10.ls Protein phosphatase 2A regulatory B subunit   1040.2          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01603.10.fs   1/1     113   502 .]     1   393 [.  1062.7        0
PF01603.10.ls   1/1     113   502 .]     1   412 []  1040.2        0

Alignments of top-scoring domains:
PF01603.10.fs: domain 1 of 1, from 113 to 502: score 1062.7, E = 0
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFtDPlkdlkeKEiKRqtL
                      pLP++kDvp+sE++eLf+kKL+qCcv+FDF+D+l+dlk+KE+KR tL
     bm04221   113    PLPLLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTL 159  

                   lELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeED
                   +ELvDy+t srg ltE++ype+v+Mvs+N+FRtLpPs+ +   efDpeED
     bm04221   160 NELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSN---EFDPEED 206  

                   EPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFDS
                   EPtLE++WPHLQlVYE+F+RFleS++f++++AK+YiDqkFvl+LL+LFDS
     bm04221   207 EPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 256  

                   EDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIAE
                   EDPRERd+LKT+LHRIYGKFL+lRaFIRKqiNNIF+rF+YEtE++nG+AE
     bm04221   257 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAE 306  

                   LLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiVQ
                   LLEILGSIINGFALPLK+EHK+FLv+VLiPLH+++slsl+H+QLaYCiVQ
     bm04221   307 LLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQ 356  

                   FvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqKi
                   F+EKDp+Lte+VIrGL K+WPkt+SqKEVmFLgElEEIL+vieP++F+Ki
     bm04221   357 FLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKI 406  

                   mvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFPa
                   ++PLF+QIA+CvsS+HFQVAERALy+WNNeyi+sLIe+N+ vILPI+F +
     bm04221   407 QEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSS 456  

                   LernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrake<-*
                   L+r+skeHWN++i++LvyNVlK FmEm++ +Fde+ta+Yk+dr++e   
     bm04221   457 LYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQRE    502  

PF01603.10.ls: domain 1 of 1, from 113 to 502: score 1040.2, E = 0
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFtDPlkdlkeKEiKRqtL
                      pLP++kDvp+sE++eLf+kKL+qCcv+FDF+D+l+dlk+KE+KR tL
     bm04221   113    PLPLLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTL 159  

                   lELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeED
                   +ELvDy+t srg ltE++ype+v+Mvs+N+FRtLpPs+ +   efDpeED
     bm04221   160 NELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSN---EFDPEED 206  

                   EPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFDS
                   EPtLE++WPHLQlVYE+F+RFleS++f++++AK+YiDqkFvl+LL+LFDS
     bm04221   207 EPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDS 256  

                   EDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIAE
                   EDPRERd+LKT+LHRIYGKFL+lRaFIRKqiNNIF+rF+YEtE++nG+AE
     bm04221   257 EDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAE 306  

                   LLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiVQ
                   LLEILGSIINGFALPLK+EHK+FLv+VLiPLH+++slsl+H+QLaYCiVQ
     bm04221   307 LLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQ 356  

                   FvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqKi
                   F+EKDp+Lte+VIrGL K+WPkt+SqKEVmFLgElEEIL+vieP++F+Ki
     bm04221   357 FLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKI 406  

                   mvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFPa
                   ++PLF+QIA+CvsS+HFQVAERALy+WNNeyi+sLIe+N+ vILPI+F +
     bm04221   407 QEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSS 456  

                   LernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekeke
                   L+r+skeHWN++i++LvyNVlK FmEm++ +Fde+ta+Yk+dr++e    
     bm04221   457 LYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQRE---- 502  

                   ekReelWkkLEelas<-*
                                     
     bm04221     - ---------------    -    

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