# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm04245.fasta.nr -Q bm04245.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm04245, 184 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823278 sequences Expectation_n fit: rho(ln(x))= 5.0304+/-0.000189; mu= 7.6669+/- 0.011 mean_var=70.6044+/-13.727, 0's: 40 Z-trim: 57 B-trim: 758 in 1/64 Lambda= 0.152636 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|148666225|gb|EDK98641.1| mCG119115, isoform CRA ( 184) 1227 278.6 3.1e-73 gi|73619718|sp|Q5R6X7.1|CBX3_PONAB Chromobox prote ( 183) 1221 277.3 7.8e-73 gi|82913885|ref|XP_926464.1| PREDICTED: similar to ( 183) 1217 276.4 1.4e-72 gi|80474659|gb|AAI08371.1| Chromobox homolog 3 (Dr ( 183) 1216 276.2 1.7e-72 gi|149705633|ref|XP_001499032.1| PREDICTED: simila ( 183) 1216 276.2 1.7e-72 gi|7416937|gb|AAF62370.1|AF136630_1 heterochromati ( 183) 1216 276.2 1.7e-72 gi|109100925|ref|XP_001086720.1| PREDICTED: simila ( 183) 1215 276.0 1.9e-72 gi|21903394|sp|P23198|CBX3_MOUSE Chromobox protein ( 183) 1214 275.7 2.3e-72 gi|126341829|ref|XP_001363165.1| PREDICTED: simila ( 183) 1211 275.1 3.6e-72 gi|109067205|ref|XP_001095397.1| PREDICTED: simila ( 442) 1189 270.5 2e-70 gi|82571443|gb|AAI10377.1| Chromobox homolog 3 (Dr ( 183) 1182 268.7 3e-70 gi|149634031|ref|XP_001508853.1| PREDICTED: simila ( 184) 1177 267.6 6.4e-70 gi|148667673|gb|EDL00090.1| mCG117845 [Mus musculu ( 173) 1163 264.5 5.2e-69 gi|148678388|gb|EDL10335.1| mCG113229 [Mus musculu ( 183) 1163 264.5 5.4e-69 gi|148684734|gb|EDL16681.1| mCG122912 [Mus musculu ( 173) 1159 263.6 9.6e-69 gi|58568516|gb|AAW78991.1| GekBS145P [Gekko japoni ( 184) 1159 263.6 1e-68 gi|1773227|gb|AAB48101.1| HP1Hs-gamma gi|57321 ( 173) 1157 263.2 1.3e-68 gi|53165|emb|CAA40012.1| modifier 2 [Mus musculus] ( 173) 1156 263.0 1.5e-68 gi|83014973|ref|XP_917516.1| PREDICTED: similar to ( 183) 1144 260.3 9.9e-68 gi|109474293|ref|XP_001068590.1| PREDICTED: simila ( 183) 1134 258.1 4.5e-67 gi|38074891|ref|XP_356668.1| PREDICTED: similar to ( 183) 1124 255.9 2.1e-66 gi|3649785|dbj|BAA33401.1| chromobox protein (CHCB ( 174) 1122 255.5 2.7e-66 gi|76650039|ref|XP_876253.1| PREDICTED: similar to ( 181) 1115 253.9 8.2e-66 gi|82950919|ref|XP_898506.1| PREDICTED: similar to ( 182) 1101 250.9 7e-65 gi|82950935|ref|XP_619114.2| PREDICTED: similar to ( 182) 1090 248.4 3.7e-64 gi|148683154|gb|EDL15101.1| mCG115204 [Mus musculu ( 173) 1086 247.5 6.6e-64 gi|170284612|gb|AAI61202.1| Unknown (protein for M ( 174) 1083 246.9 1e-63 gi|29468101|gb|AAO39117.1| heterochromatin protein ( 174) 1079 246.0 1.9e-63 gi|74009122|ref|XP_855267.1| PREDICTED: similar to ( 189) 1071 244.3 7e-63 gi|28302266|gb|AAH46570.1| Cbx3-prov protein [Xeno ( 174) 1070 244.0 7.6e-63 gi|2454534|gb|AAC60299.1| heterochromatin protein ( 171) 1044 238.3 4e-61 gi|112418988|gb|AAI22268.1| Chromobox homolog 3a ( ( 174) 906 207.9 5.7e-52 gi|149586614|ref|XP_001514727.1| PREDICTED: simila ( 195) 871 200.2 1.3e-49 gi|94482766|gb|ABF22386.1| chromobox-like 3 [Takif ( 180) 867 199.3 2.2e-49 gi|149054001|gb|EDM05818.1| rCG35120, isoform CRA_ ( 185) 849 195.4 3.6e-48 gi|48428808|sp|P83916|CBX1_HUMAN Chromobox protein ( 185) 848 195.2 4.2e-48 gi|119918127|ref|XP_001249482.1| PREDICTED: simila ( 185) 846 194.7 5.6e-48 gi|49256331|gb|AAH74418.1| MGC84435 protein [Xenop ( 184) 845 194.5 6.6e-48 gi|126308228|ref|XP_001366994.1| PREDICTED: simila ( 185) 845 194.5 6.6e-48 gi|109491751|ref|XP_001081346.1| PREDICTED: simila ( 432) 849 195.7 6.9e-48 gi|48249223|gb|AAT40864.1| heterochromatin protein ( 185) 844 194.3 7.7e-48 gi|3649783|dbj|BAA33400.1| chromobox protein (CHCB ( 185) 842 193.8 1e-47 gi|109106934|ref|XP_001088037.1| PREDICTED: simila ( 185) 842 193.8 1e-47 gi|109488886|ref|XP_340886.3| PREDICTED: similar t ( 749) 849 195.8 1e-47 gi|89272794|emb|CAJ82321.1| chromobox homolog 1 (H ( 184) 841 193.6 1.2e-47 gi|73946793|ref|XP_850845.1| PREDICTED: similar to ( 141) 827 190.4 8.3e-47 gi|76655689|ref|XP_876701.1| PREDICTED: similar to ( 185) 823 189.6 1.9e-46 gi|119892895|ref|XP_001251310.1| PREDICTED: simila ( 185) 822 189.4 2.2e-46 gi|109106953|ref|XP_001089379.1| PREDICTED: simila ( 144) 816 188.0 4.5e-46 gi|154183841|gb|ABS70780.1| chromobox-like protein ( 179) 815 187.9 6.2e-46 >>gi|148666225|gb|EDK98641.1| mCG119115, isoform CRA_b [ (184 aa) initn: 1227 init1: 1227 opt: 1227 Z-score: 1469.9 bits: 278.6 E(): 3.1e-73 Smith-Waterman score: 1227; 100.000% identity (100.000% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 60 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR 70 80 90 100 110 120 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 130 140 150 160 170 180 bm0424 DEAQ :::: gi|148 DEAQ >>gi|73619718|sp|Q5R6X7.1|CBX3_PONAB Chromobox protein h (183 aa) initn: 1221 init1: 1221 opt: 1221 Z-score: 1462.8 bits: 277.3 E(): 7.8e-73 Smith-Waterman score: 1221; 100.000% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|736 DEAQ 180 >>gi|82913885|ref|XP_926464.1| PREDICTED: similar to Chr (183 aa) initn: 1217 init1: 1217 opt: 1217 Z-score: 1458.0 bits: 276.4 E(): 1.4e-72 Smith-Waterman score: 1217; 99.454% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|829 TWEPEENLDCPELIEAFFNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|829 DEAQ 180 >>gi|80474659|gb|AAI08371.1| Chromobox homolog 3 (Drosop (183 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1456.9 bits: 276.2 E(): 1.7e-72 Smith-Waterman score: 1216; 99.454% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|804 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSEKKRDAADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|804 DEAQ 180 >>gi|149705633|ref|XP_001499032.1| PREDICTED: similar to (183 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1456.9 bits: 276.2 E(): 1.7e-72 Smith-Waterman score: 1216; 99.454% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|149 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDTADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|149 DEAQ 180 >>gi|7416937|gb|AAF62370.1|AF136630_1 heterochromatin-li (183 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1456.9 bits: 276.2 E(): 1.7e-72 Smith-Waterman score: 1216; 99.454% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|741 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAVDKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|741 DEAQ 180 >>gi|109100925|ref|XP_001086720.1| PREDICTED: similar to (183 aa) initn: 1215 init1: 1215 opt: 1215 Z-score: 1455.7 bits: 276.0 E(): 1.9e-72 Smith-Waterman score: 1215; 99.454% identity (99.454% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|109 TWEPEENLDCPELTEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|109 DEAQ 180 >>gi|21903394|sp|P23198|CBX3_MOUSE Chromobox protein hom (183 aa) initn: 1214 init1: 1214 opt: 1214 Z-score: 1454.5 bits: 275.7 E(): 2.3e-72 Smith-Waterman score: 1214; 99.454% identity (99.454% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: gi|219 TWEPEENLDCPELIEDFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|219 DEAQ 180 >>gi|126341829|ref|XP_001363165.1| PREDICTED: similar to (183 aa) initn: 1211 init1: 1211 opt: 1211 Z-score: 1450.9 bits: 275.1 E(): 3.6e-72 Smith-Waterman score: 1211; 98.907% identity (100.000% similar) in 183 aa overlap (2-184:1-183) 10 20 30 40 50 60 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN 10 20 30 40 50 70 80 90 100 110 120 bm0424 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFAR :::::::::::::::::::::::::::::::::::::::::::::::::..::::::::: gi|126 TWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRESADKPRGFAR 60 70 80 90 100 110 130 140 150 160 170 180 bm0424 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPE 120 130 140 150 160 170 bm0424 DEAQ :::: gi|126 DEAQ 180 >>gi|109067205|ref|XP_001095397.1| PREDICTED: similar to (442 aa) initn: 1189 init1: 1189 opt: 1189 Z-score: 1419.4 bits: 270.5 E(): 2e-70 Smith-Waterman score: 1189; 98.883% identity (100.000% similar) in 179 aa overlap (6-184:264-442) 10 20 30 bm0424 KMASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEK .:.::::::::::::::::::::::::::: gi|109 SRVREAWRRAADCPEVAAAVPLTWPPRGEFETSLQKMGKKQNGKSKKVEEAEPEEFVVEK 240 250 260 270 280 290 40 50 60 70 80 90 bm0424 VLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSL 300 310 320 330 340 350 100 110 120 130 140 150 bm0424 SDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAK 360 370 380 390 400 410 160 170 180 bm0424 EANMKCPQIVIAFYEERLTWHSCPEDEAQ ::::::::::::::::::::::::::::: gi|109 EANMKCPQIVIAFYEERLTWHSCPEDEAQ 420 430 440 184 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 18:57:22 2008 done: Thu Aug 7 19:00:22 2008 Total Scan time: 618.940 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]