hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19002396/chunk_1/iprscan-20080807-19002396.nocrc
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Query sequence: bm04245
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01393.9.fs  Chromo shadow domain                      139.7    1.4e-40   1
PF01393.9.ls  Chromo shadow domain                      141.6    1.9e-39   1
PF00385.14.ls 'chromo' (CHRromatin Organisation MOdif    91.1    3.1e-24   2
PF00385.14.fs 'chromo' (CHRromatin Organisation MOdif    87.6    3.4e-23   2

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00385.14.fs   1/2      31    80 ..     1    68 []    79.6  5.6e-21
PF00385.14.ls   1/2      31    80 ..     1    68 []    81.3  2.7e-21
PF01393.9.fs    1/1     120   177 ..     1    63 []   139.7  1.4e-40
PF01393.9.ls    1/1     120   177 ..     1    63 []   141.6  1.9e-39

Alignments of top-scoring domains:
PF00385.14.fs: domain 1 of 2, from 31 to 80: score 79.6, E = 5.6e-21
                   *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp
                      ++VE++Ld+r++ g+              eY+ KWkG+ + +nTWEp
     bm04245    31    FVVEKVLDRRVVNGKV-------------EYFLKWKGFTDADNTWEP 64   

                   eenLkackgfpelkieefeqr<-*
                   eenL+ c   pel ie+f ++   
     bm04245    65 EENLD-C---PEL-IEAFLNS    80   

PF00385.14.ls: domain 1 of 2, from 31 to 80: score 81.3, E = 2.7e-21
                   *->yeVErILdhrlrkggkksvplpekpitgleYLVKWkGypyeenTWEp
                      ++VE++Ld+r++ g+              eY+ KWkG+ + +nTWEp
     bm04245    31    FVVEKVLDRRVVNGKV-------------EYFLKWKGFTDADNTWEP 64   

                   eenLkackgfpelkieefeqr<-*
                   eenL+ c   pel ie+f ++   
     bm04245    65 EENLD-C---PEL-IEAFLNS    80   

PF01393.9.fs: domain 1 of 1, from 120 to 177: score 139.7, E = 1.4e-40
                   *->rGkelekIvGatDspERKDDGeLhFLckfkdvDeadLvPakeaNvKc
                      rG+++e+I+GatDs+     GeL+FL+k+kd+DeadLv+akeaN+Kc
     bm04245   120    RGLDPERIIGATDSS-----GELMFLMKWKDSDEADLVLAKEANMKC 161  

                   PqqViaFYEerLtwqe<-*
                   Pq+ViaFYEerLtw++   
     bm04245   162 PQIVIAFYEERLTWHS    177  

PF01393.9.ls: domain 1 of 1, from 120 to 177: score 141.6, E = 1.9e-39
                   *->rGkelekIvGatDspERKDDGeLhFLckfkdvDeadLvPakeaNvKc
                      rG+++e+I+GatDs+     GeL+FL+k+kd+DeadLv+akeaN+Kc
     bm04245   120    RGLDPERIIGATDSS-----GELMFLMKWKDSDEADLVLAKEANMKC 161  

                   PqqViaFYEerLtwqe<-*
                   Pq+ViaFYEerLtw++   
     bm04245   162 PQIVIAFYEERLTWHS    177  

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