hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19002396/chunk_1/iprscan-20080807-19002396.nocrc
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Query sequence: bm04245
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00300                                                 127.9    1.1e-33   1
SM00298                                                  88.7      7e-22   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00298    1/2      30    82 ..     1    63 []    73.1  3.4e-17
SM00300    1/1     116   178 ..     1    73 []   127.9  1.1e-33
SM00298    2/2     121   173 ..     1    63 []    15.6        1

Alignments of top-scoring domains:
SM00298: domain 1 of 2, from 30 to 82: score 73.1, E = 3.4e-17
                   *->eyeivEkIldhrwekkkgeveYLVKWkGysysedtWEpeenleemLk
                      e++ vEk+ld+r    +g+veY+ KWkG+ + ++tWEpeenl+    
     bm04245    30    EFV-VEKVLDRR--VVNGKVEYFLKWKGFTDADNTWEPEENLD---- 69   

                   kkncekkldeykkrek<-*
                      c+++++++   +k   
     bm04245    70 ---CPELIEAFLNSQK    82   

SM00300: domain 1 of 1, from 116 to 178: score 127.9, E = 1.1e-33
                   *->kdesrgkdledIVgitkPmSFEtverdddGeLtFlikwkdvdkaslv
                      ++++rg+d+e+I+g+t+          ++GeL+Fl+kwkd+d+a+lv
     bm04245   116    RGFARGLDPERIIGATD----------SSGELMFLMKWKDSDEADLV 152  

                   pnkiaNvkcPqkvIrFYEehLtfqsd<-*
                   ++k+aN kcPq+vI+FYEe+Lt++s+   
     bm04245   153 LAKEANMKCPQIVIAFYEERLTWHSC    178  

SM00298: domain 2 of 2, from 121 to 173: score 15.6, E = 1
                   *->eyeivEkIldhrwekkkgeveYLVKWkGysysedtWEpeenleemLk
                          +E+I++    +  ge+++L KWk+ ++ +    +e+n +    
     bm04245   121    GLD-PERIIGAT--DSSGELMFLMKWKDSDEADLVLAKEANMK---- 160  

                   kkncekkldeykkrek<-*
                      c++ + ++++++    
     bm04245   161 ---CPQIVIAFYEERL    173  

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