hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11393292/chunk_1/iprscan-20090416-11393292.nocrc
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Query sequence: bm04279
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        99.2    1.1e-26   4
PF00400.22.fs WD domain, G-beta repeat                        95.2    7.4e-26   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/4      74   115 ..     1    38 []    21.7   0.0024
PF00400.22.fs   1/5      74   115 ..     1    38 []    19.7  0.00014
PF00400.22.fs   2/5     121   159 ..     1    38 []    35.7  4.4e-09
PF00400.22.ls   2/4     121   159 ..     1    38 []    37.6  3.8e-08
PF00400.22.fs   3/5     162   202 ..     1    38 []    23.2  1.4e-05
PF00400.22.ls   3/4     162   202 ..     1    38 []    25.2  0.00021
PF00400.22.fs   4/5     320   346 ..    11    38 .]    15.4   0.0022

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 4, from 74 to 115: score 21.7, E = 0.0024
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                       + + v +   +++ c++fsp++  g++l+ gS+ + ++ W+   
     bm04279    74    MKDIeVTsSPDDSIGCLSFSPPtlPGNFLIAGSWANDVRCWE    115  

PF00400.22.fs: domain 1 of 5, from 74 to 115: score 19.7, E = 0.00014
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                       + + v +   +++ c++fsp++  g++l+ gS+ + ++ W+   
     bm04279    74    MKDIeVTsSPDDSIGCLSFSPPtlPGNFLIAGSWANDVRCWE    115  

PF00400.22.fs: domain 2 of 5, from 121 to 159: score 35.7, E = 4.4e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  +  + Ht++V +v++s d g+ ++++S+D+t k+Wd   
     bm04279   121    QTIPkAQqMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWD    159  

PF00400.22.ls: domain 2 of 4, from 121 to 159: score 37.6, E = 3.8e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  +  + Ht++V +v++s d g+ ++++S+D+t k+Wd   
     bm04279   121    QTIPkAQqMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWD    159  

PF00400.22.fs: domain 3 of 5, from 162 to 202: score 23.2, E = 1.4e-05
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                       ++   +  H ++V  + +   ++++++ +gS+D+t+k Wd   
     bm04279   162    SNQAiQIaQHDAPVKTIHWIKApNYSCVMTGSWDKTLKFWD    202  

PF00400.22.ls: domain 3 of 4, from 162 to 202: score 25.2, E = 0.00021
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                       ++   +  H ++V  + +   ++++++ +gS+D+t+k Wd   
     bm04279   162    SNQAiQIaQHDAPVKTIHWIKApNYSCVMTGSWDKTLKFWD    202  

PF00400.22.fs: domain 4 of 5, from 320 to 346: score 15.4, E = 0.0022
                   *->tVtcvafspdsgpllasgSrDgtikiWd<-*
                      +V+ +af+p    +la+ ++Dg    Wd   
     bm04279   320    AVNGIAFHPV-HGTLATVGSDGRFSFWD    346  

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