hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11393292/chunk_1/iprscan-20090416-11393292.nocrc
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Query sequence: bm04279
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 108.1      1e-27   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4      73   115 ..     1    46 []    15.6      1.7
SM00320    2/4     121   159 ..     1    46 []    40.9  1.7e-07
SM00320    3/4     162   202 ..     1    46 []    24.1    0.019
SM00320    4/4     295   346 ..     1    46 []    27.4   0.0019

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 73 to 115: score 15.6, E = 1.7
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k + + +  ++  ++ +++fsp      ++n+l++gs+ + +r+W
     bm04279    73    PmKDIEVTSSPDD--SIGCLSFSPPT---LPGNFLIAGSwANDVRCW 114  

                   d<-*
                   +   
     bm04279   115 E    115  

SM00320: domain 2 of 4, from 121 to 159: score 40.9, E = 1.7e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ + +    Htg  pV++v++s+dg      + ++++s D+t ++W
     bm04279   121    QtIPKAQQM-HTG--PVLDVCWSDDG------SKVFTAScDKTAKMW 158  

                   d<-*
                   d   
     bm04279   159 D    159  

SM00320: domain 3 of 4, from 162 to 202: score 24.1, E = 0.019
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +++ + H++  pV ++ +        + +++ +gs+D+t+++W
     bm04279   162    SnQAIQIAQ-HDA--PVKTIHWIKAP----NYSCVMTGSwDKTLKFW 201  

                   d<-*
                   d   
     bm04279   202 D    202  

SM00320: domain 4 of 4, from 295 to 346: score 27.4, E = 0.0019
                   *->t.kllrtlkgHtge..........spVtsvafspdggssdspnllas
                      + k  +t+k+H++++++++ +++ ++V+++af+p +        la+
     bm04279   295    PaKDNFTFKCHRSNgtntsapqdiYAVNGIAFHPVH------GTLAT 335  

                   gs.DgtirlWd<-*
                    ++Dg   +Wd   
     bm04279   336 VGsDGRFSFWD    346  

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