hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-11412180/chunk_1/iprscan-20090525-11412180.nocrc
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Query sequence: bm04280
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01412.9.ls Putative GTPase activating protein for Arf     193.7    3.9e-55   1
PF01412.9.fs Putative GTPase activating protein for Arf     191.9    6.6e-55   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01412.9.fs   1/1      48   166 ..     1   137 []   191.9  6.6e-55
PF01412.9.ls   1/1      48   166 ..     1   137 []   193.7  3.9e-55

Alignments of top-scoring domains:
PF01412.9.fs: domain 1 of 1, from 48 to 166: score 191.9, E = 6.6e-55
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                      q+vl+ L  ++ +Nk C+DC++ + P+WaS+n+Gvf+Ci+C+GiHRn
     bm04280    48    QAVLANLLLEE-DNKFCADCQS-KGPRWASWNIGVFICIRCAGIHRN 92   

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L GvHiS+V  +S++LD+Wt+e+++ ++  ++GN +an+ +E+ l++  +
     bm04280    93 L-GVHISRV--KSVNLDQWTQEQIQCMQ--EMGNGKANRLYEAYLPETFR 137  

                   kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   +p+            +  +e fi++KYe+k++ ++  ++    
     bm04280   138 RPQI-----------DPAVEGFIRDKYEKKKYMDRSLDIN    166  

PF01412.9.ls: domain 1 of 1, from 48 to 166: score 193.7, E = 3.9e-55
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                      q+vl+ L  ++ +Nk C+DC++ + P+WaS+n+Gvf+Ci+C+GiHRn
     bm04280    48    QAVLANLLLEE-DNKFCADCQS-KGPRWASWNIGVFICIRCAGIHRN 92   

                   LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl
                   L GvHiS+V  +S++LD+Wt+e+++ ++  ++GN +an+ +E+ l++  +
     bm04280    93 L-GVHISRV--KSVNLDQWTQEQIQCMQ--EMGNGKANRLYEAYLPETFR 137  

                   kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   +p+            +  +e fi++KYe+k++ ++  ++    
     bm04280   138 RPQI-----------DPAVEGFIRDKYEKKKYMDRSLDIN    166  

//