hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19061225/chunk_1/iprscan-20080807-19061225.nocrc
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Query sequence: bm04283
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00047.15.ls Immunoglobulin domain                           75.2    1.9e-19   3
PF00047.15.fs Immunoglobulin domain                           72.1    5.1e-19   3
PF07679.6.fs Immunoglobulin I-set domain                     37.1    3.3e-10   3
PF07686.7.fs Immunoglobulin V-set domain                     20.9      2e-05   3
PF07679.6.ls Immunoglobulin I-set domain                      9.0     0.0002   1
PF07686.7.ls Immunoglobulin V-set domain                     15.3     0.0014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07679.6.ls   1/1      85   198 ..     1    96 []     9.0   0.0002
PF07686.7.ls   1/1      85   200 ..     1   141 []    15.3   0.0014
PF00047.15.fs   1/3      99   172 ..     1    65 []    33.9  1.5e-08
PF00047.15.ls   1/3      99   172 ..     1    65 []    35.8  1.3e-07
PF00047.15.ls   2/3     219   274 ..     1    65 []    20.5   0.0054
PF00047.15.fs   2/3     219   274 ..     3    65 .]    21.3  4.4e-05
PF00047.15.fs   3/3     306   372 ..     1    65 []    16.9  0.00068
PF00047.15.ls   3/3     306   372 ..     1    65 []    18.8    0.018

Alignments of top-scoring domains:
PF07679.6.ls: domain 1 of 1, from 85 to 198: score 9.0, E = 0.0002
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp
                        F++ p + +   G++ ++ C+V G+P+P+++W        +    
     bm04283    85    AGFVKSPMSETKLTGDAFELYCDVVGSPTPEIQWWYAEVNRAE---- 127  

                   sdrfkvtydg.............GsgtytLtIsnvqpdDsGkYtCvAtN.
                      f+  +dg ++++ + ++  + +g + L+I + + +DsG+Y C+A+N+
     bm04283   128 --SFRQLWDGarkrrvtvntaygSNGVSVLRITRLTLEDSGTYECRASNd 175  

                   ..........saGeaeasaeLtV<-*
                   +++++ ++++s     a a+  V   
     bm04283   176 pkrndlrqnpSITWIRAQATISV    198  

PF07686.7.ls: domain 1 of 1, from 85 to 200: score 15.3, E = 0.0014
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      +  v    p             s t+ +G+  +L C +    +++  
     bm04283    85    AGFVKS--PM------------SETKLTGDAFELYCDVV---GSP-- 112  

                   ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls
                     ++ +i+W +                 +   s+++ + g r++   +++
     bm04283   113 --TP-EIQWWY-AEV-------------NRAESFRQLWDGARKR---RVT 142  

                   gnps...kgdfsLtIsnlqlsDsGtYyCavsns...........nelvfg
                   +n+  +++g   L+I+ l+l+DsGtY C  sn +++++ +++++ +++  
     bm04283   143 VNTAygsNGVSVLRITRLTLEDSGTYECRASNDpkrndlrqnpsITWIRA 192  

                   ggtrLtVl<-*
                   + t  +     
     bm04283   193 QATISVLQ    200  

PF00047.15.fs: domain 1 of 3, from 99 to 172: score 33.9, E = 1.5e-08
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ + L C v   g+p ++++W+ +  +  ++ ++ ++  + ++++ 
     bm04283    99    GDAFELYCDV--VGSPTPEIQWWYAEVnRAeSFRQLWDGARKRRVTV 143  

                   t.........sLtitnvtpeDggtYtCvv<-*
                    +  ++++ ++L+it++t eD+gtY C++   
     bm04283   144 NtaygsngvsVLRITRLTLEDSGTYECRA    172  

PF00047.15.ls: domain 1 of 3, from 99 to 172: score 35.8, E = 1.3e-07
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ + L C v   g+p ++++W+ +  +  ++ ++ ++  + ++++ 
     bm04283    99    GDAFELYCDV--VGSPTPEIQWWYAEVnRAeSFRQLWDGARKRRVTV 143  

                   t.........sLtitnvtpeDggtYtCvv<-*
                    +  ++++ ++L+it++t eD+gtY C++   
     bm04283   144 NtaygsngvsVLRITRLTLEDSGTYECRA    172  

PF00047.15.ls: domain 2 of 3, from 219 to 274: score 20.5, E = 0.0054
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                        +vtL+C  +++++  ++ +W++ng +l    +  s  +       
     bm04283   219    --PVTLQCNLTSSSHTLTYSYWTKNGVeLSaTRKNASNME------- 256  

                   tsLtitnvtpeDggtYtCvv<-*
                      +i++ + eD+g+Y Cv    
     bm04283   257 --YRINKPRAEDSGEYHCVY    274  

PF00047.15.fs: domain 2 of 3, from 219 to 274: score 21.3, E = 4.4e-05
                   *->svtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyqts
                      +vtL+C  +++++  ++ +W++ng +l    +  s  +         
     bm04283   219    PVTLQCNLTSSSHTLTYSYWTKNGVeLSaTRKNASNME--------- 256  

                   LtitnvtpeDggtYtCvv<-*
                    +i++ + eD+g+Y Cv    
     bm04283   257 YRINKPRAEDSGEYHCVY    274  

PF00047.15.fs: domain 3 of 3, from 306 to 372: score 16.9, E = 0.00068
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+++t+ C +   g p+++  W++   +++ + + ts     +++++
     bm04283   306    GQDATMYCKS--VGYPHPDWIWRKKENgMPmDIVNTS-----GRFFI 345  

                   t......sLtitnvtpe.DggtYtCvv<-*
                   +++++ + L+i n++  +D g+Y C +   
     bm04283   346 InkenytELNIVNLQITeDPGEYECNA    372  

PF00047.15.ls: domain 3 of 3, from 306 to 372: score 18.8, E = 0.018
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+++t+ C +   g p+++  W++   +++ + + ts     +++++
     bm04283   306    GQDATMYCKS--VGYPHPDWIWRKKENgMPmDIVNTS-----GRFFI 345  

                   t......sLtitnvtpe.DggtYtCvv<-*
                   +++++ + L+i n++  +D g+Y C +   
     bm04283   346 InkenytELNIVNLQITeDPGEYECNA    372  

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