hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19061225/chunk_1/iprscan-20080807-19061225.nocrc
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Query sequence: bm04283
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00409                                                  84.7    1.1e-20   3
SM00408                                                  75.8    5.5e-18   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/3      91   199 ..     1    58 []    43.2  3.5e-08
SM00408    1/2      97   177 ..     1    56 []    46.1  4.7e-09
SM00409    2/3     212   289 ..     1    58 []    19.5     0.46
SM00409    3/3     298   388 ..     1    58 []    22.0    0.083
SM00408    2/2     304   377 ..     1    56 []    29.7  0.00041

Alignments of top-scoring domains:
SM00409: domain 1 of 3, from 91 to 199: score 43.2, E = 3.5e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p + t   G+  +L C++ ++++++i+W+    ++  + ++  ++ +
     bm04283    91    PMsETKLTGDAFELYCdVVgsptpEIQWWyaevnraesfrqlwdgar 137  

                   .................LtI.nvtpeDsesgGtYtCaat...........
                   +++ + ++  ++++ + L+I+++t+eDs   GtY C+a++++++++ + +
     bm04283   138 krrvtvntaygsngvsvLRItRLTLEDS---GTYECRASndpkrndlrqn 184  

                   .sgsasseqgttLtVl<-*
                   +s +      +t++Vl   
     bm04283   185 pSITWIR-AQATISVL    199  

SM00408: domain 1 of 2, from 97 to 177: score 46.1, E = 4.7e-09
                   *->leGqsVtLtCpasgdpvpnItWlkgkplp..................
                      l G++++L C++ g+p+p+I+W +  ++++ ++ ++  ++ ++++ +
     bm04283    97    LTGDAFELYCDVVGSPTPEIQWWY-AEVNraesfrqlwdgarkrrvt 142  

                   ........sgstLtiknvsleDsGlYtCvArNsvg<-*
                    ++  ++++ s L+i++ +leDsG+Y+C+A+N      
     bm04283   143 vntaygsnGVSVLRITRLTLEDSGTYECRASNDPK    177  

SM00409: domain 2 of 3, from 212 to 289: score 19.5, E = 0.46
                   *->pp.vtvkeGesvtLtC.as.......titWy................
                       ++  v    +vtL+C+ ++++++ ++ +W++++   + ++++ ++ 
     bm04283   212    IRdSPVL---PVTLQCnLTssshtltYSYWTkngvelsatrknasnm 255  

                   .LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-*
                     +I++ ++eDs   G+Y C+ +     ++  ++t++V+   
     bm04283   256 eYRInKPRAEDS---GEYHCVYHfVSAPKA--NATIEVK    289  

SM00409: domain 3 of 3, from 298 to 388: score 22.0, E = 0.083
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       ++   +eG+++t+ C+  + +++   W+++ ++ + +  +++++  
     bm04283   298    KRsENKNEGQDATMYCkSVgyphpDWIWRkkengmpmdivntsgrff 344  

                   .........LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<
                     ++ + + L+I n++      +G+Y C at ++sg  +    ++L+ + 
     bm04283   345 iinkenyteLNIvNLQITED--PGEYECNATwphSGLSWE---FWLKLS  388  

                   -*
                     
     bm04283     -    -    

SM00408: domain 2 of 2, from 304 to 377: score 29.7, E = 0.00041
                   *->leGqsVtLtCpasgdpvpnItWlk...gkplp..............s
                      +eGq++t+ C+  g+p p+  W+k+++g p++  +++++    ++++
     bm04283   304    NEGQDATMYCKSVGYPHPDWIWRKkenGMPMDivntsgrffiinkeN 350  

                   gstLtiknvs.leDsGlYtCvArNsvg<-*
                     +L+i n +  eD G+Y+C A+ +++   
     bm04283   351 YTELNIVNLQiTEDPGEYECNATWPHS    377  

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