hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090526/iprscan-20090526-15125419/chunk_1/iprscan-20090526-15125419.nocrc
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Query sequence: bm04288
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.fs DEAD/DEAH box helicase                       196.2      7e-56   2
PF00270.19.ls DEAD/DEAH box helicase                       195.7      1e-55   1
PF00271.21.fs Helicase conserved C-terminal domain         128.8    5.4e-37   1
PF00271.21.ls Helicase conserved C-terminal domain         130.8    3.5e-36   1
PF00098.13.ls Zinc knuckle                                  21.1    0.00031   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/2     200   380 ..     1   213 []   193.9  3.7e-55
PF00270.19.ls   1/1     200   380 ..     1   213 []   195.7    1e-55
PF00271.21.fs   1/1     446   522 ..     1    76 []   128.8  5.4e-37
PF00271.21.ls   1/1     446   522 ..     1    76 []   130.8  3.5e-36
PF00098.13.ls   1/1     575   592 ..     1    18 []    21.1  0.00031

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 2, from 200 to 380: score 193.9, E = 3.7e-55
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ + ip+il+GrD++++A TGSGKTl+f lP++  +   +   q
     bm04288   200    TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI--MFClE---Q 241  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                   e++ ++ k++gp+ l+++P reLa+Q++  l+ ++  +q d  +ll  ++
     bm04288   242 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLL--RC 289  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   al++GG+s+keq e +  r  +g    +++ v+TPgrL+dll    ++ +
     bm04288   290 ALCIGGMSVKEQMETI--R--HG----VHMMVATPGRLMDLL----QK-K 326  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                     ++l+ +++l lDEA+r+ dm Gf+ d++ i++  +  +          
     bm04288   327 M-VSLDICRYLALDEADRMIDM-GFEGDIRTIFSYFK-GQ---------- 363  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT+p++++++   
     bm04288   364 RQTLLFSATMPKKIQNF    380  

PF00270.19.ls: domain 1 of 1, from 200 to 380: score 195.7, E = 1e-55
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      tpiQ + ip+il+GrD++++A TGSGKTl+f lP++  +   +   q
     bm04288   200    TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI--MFClE---Q 241  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                   e++ ++ k++gp+ l+++P reLa+Q++  l+ ++  +q d  +ll  ++
     bm04288   242 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLL--RC 289  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   al++GG+s+keq e +  r  +g    +++ v+TPgrL+dll    ++ +
     bm04288   290 ALCIGGMSVKEQMETI--R--HG----VHMMVATPGRLMDLL----QK-K 326  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                     ++l+ +++l lDEA+r+ dm Gf+ d++ i++  +  +          
     bm04288   327 M-VSLDICRYLALDEADRMIDM-GFEGDIRTIFSYFK-GQ---------- 363  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT+p++++++   
     bm04288   364 RQTLLFSATMPKKIQNF    380  

PF00271.21.fs: domain 1 of 1, from 446 to 522: score 128.8, E = 5.4e-37
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l ++g++++++hGg++qeeR++++e+Fr+gk +vLvaTdva+ G+D
     bm04288   446    YLlLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLD 492  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p++++VInyd+p  +e+y++RiGR+GR G   
     bm04288   493 FPAIQHVINYDMPEEIENYVHRIGRTGRSG    522  

PF00271.21.ls: domain 1 of 1, from 446 to 522: score 130.8, E = 3.5e-36
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l ++g++++++hGg++qeeR++++e+Fr+gk +vLvaTdva+ G+D
     bm04288   446    YLlLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLD 492  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p++++VInyd+p  +e+y++RiGR+GR G   
     bm04288   493 FPAIQHVINYDMPEEIENYVHRIGRTGRSG    522  

PF00098.13.ls: domain 1 of 1, from 575 to 592: score 21.1, E = 0.00031
                   *->rkCynCGkpGHiardCpk<-*
                      r+C  CG  GH+  dCpk   
     bm04288   575    RGCAFCGGLGHRITDCPK    592  

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