hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090526/iprscan-20090526-15125419/chunk_1/iprscan-20090526-15125419.nocrc
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Query sequence: bm04288
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 191.8    6.6e-53   1
SM00490                                                 128.6    6.9e-34   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     195   406 ..     1   219 []   191.8  6.6e-53
SM00490      1/1     441   522 ..     1    86 []   128.6  6.9e-34

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 195 to 406: score 191.8, E = 6.6e-53
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      g++ ++p+Q ++ip +l+grd+i++a TGsGKTl+f+lp++   +++
     bm04288   195    GIhHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 241  

                   kplas.kkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfv.......
                    ++   +k+ gp  L+++P+reLa+Q++  l+ ++           ++++
     bm04288   242 EKRLPfSKREGPYGLIICPSRELARQTHGILEYYC-------Rllqedss 284  

                   evlkvvglygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkgls
                   + l++++++gG s    keq++ +++g+ +  v+TpgrL+dll+++  +s
     bm04288   285 PLLRCALCIGGmSV---KEQMETIRHGV-HMMVATPGRLMDLLqKKM-VS 329  

                   l.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATp
                   l+ ++++ lDEa+r++dm      gf+ ++++++++++ +rq+ll+SAT+
     bm04288   330 LdICRYLALDEADRMIDM------GFEGDIRtIFSYFKGQRQTLLFSATM 373  

                   p.eienllklflnlpelfpnpvfisvgf...tlepieqf<-*
                   p++i+n++k  l       +pv+i+vg+ + +++++ q+   
     bm04288   374 PkKIQNFAKSALV------KPVTINVGRagaASLDVIQE    406  

SM00490: domain 1 of 1, from 441 to 522: score 128.6, E = 6.9e-34
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      d + e+L  +    g++++++HGg++qeeR++++e+Fr+gk +vLva
     bm04288   441    DAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 483  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdva+ GlD+p++ +VInyd+p  +++y++RiGR+GR G   
     bm04288   484 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSG    522  

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