# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm04309.fasta.nr -Q bm04309.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm04309, 207 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6816116 sequences Expectation_n fit: rho(ln(x))= 6.0012+/-0.000197; mu= 4.9429+/- 0.011 mean_var=107.4621+/-20.454, 0's: 42 Z-trim: 76 B-trim: 87 in 1/66 Lambda= 0.123722 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|109475302|ref|XP_001071243.1| PREDICTED: simila ( 259) 1215 226.6 2.3e-57 gi|12004970|gb|AAG44245.1| Nedd4 WW domain-binding ( 163) 1132 211.6 4.6e-53 gi|21362884|sp|Q9Y3C5|RNF11_HUMAN RING finger prot ( 154) 1097 205.3 3.4e-51 gi|30584033|gb|AAP36265.1| Homo sapiens ring finge ( 155) 1097 205.3 3.4e-51 gi|21362883|sp|Q9QYK7|RNF11_MOUSE RING finger prot ( 154) 1096 205.1 3.8e-51 gi|158259555|dbj|BAF85736.1| unnamed protein produ ( 154) 1088 203.7 1e-50 gi|149693646|ref|XP_001492343.1| PREDICTED: simila ( 154) 1086 203.4 1.3e-50 gi|109476993|ref|XP_001067720.1| PREDICTED: simila ( 154) 1083 202.8 1.9e-50 gi|53132254|emb|CAG31887.1| hypothetical protein [ ( 154) 1078 201.9 3.6e-50 gi|89273822|emb|CAJ83667.1| ring finger protein 11 ( 154) 1061 198.9 2.9e-49 gi|27696226|gb|AAH43736.1| Rnf11-a protein [Xenopu ( 154) 1058 198.4 4.2e-49 gi|47225640|emb|CAG07983.1| unnamed protein produc ( 154) 1051 197.1 1e-48 gi|169145732|emb|CAQ13858.1| novel protein similar ( 154) 1046 196.2 1.9e-48 gi|122890084|emb|CAM13662.1| ring finger protein 1 ( 144) 1040 195.1 3.7e-48 gi|66911032|gb|AAH97155.1| Zgc:114095 [Danio rerio ( 154) 1037 194.6 5.7e-48 gi|47220373|emb|CAF98472.1| unnamed protein produc ( 154) 1014 190.5 9.8e-47 gi|31419405|gb|AAH53118.1| Ring finger protein 11 ( 146) 849 161.0 6.9e-38 gi|49899884|gb|AAH76905.1| Ring finger protein 11 ( 146) 828 157.3 9.2e-37 gi|73977595|ref|XP_532582.2| PREDICTED: similar to ( 185) 812 154.5 8e-36 gi|119924788|ref|XP_001252927.1| PREDICTED: RING f ( 113) 805 153.1 1.3e-35 gi|149625313|ref|XP_001519730.1| PREDICTED: simila ( 147) 797 151.8 4.3e-35 gi|47209035|emb|CAF95108.1| unnamed protein produc ( 148) 777 148.2 5.1e-34 gi|126322795|ref|XP_001362925.1| PREDICTED: simila ( 163) 766 146.3 2.2e-33 gi|91095021|ref|XP_970287.1| PREDICTED: similar to ( 148) 691 132.8 2.1e-29 gi|149035681|gb|EDL90362.1| rCG50351, isoform CRA_ ( 107) 675 129.9 1.2e-28 gi|149597238|ref|XP_001519205.1| PREDICTED: simila ( 131) 619 119.9 1.4e-25 gi|72084978|ref|XP_792344.1| PREDICTED: hypothetic ( 140) 614 119.1 2.8e-25 gi|194155967|gb|EDW71151.1| GJ18403 [Drosophila vi ( 146) 577 112.5 2.8e-23 gi|194168722|gb|EDW83623.1| GK13710 [Drosophila wi ( 148) 574 112.0 4.2e-23 gi|54640153|gb|EAL29276.1| GA17182-PA [Drosophila ( 149) 572 111.6 5.3e-23 gi|193891612|gb|EDV90478.1| GH23621 [Drosophila gr ( 151) 559 109.3 2.7e-22 gi|20151735|gb|AAM11227.1| RE41137p [Drosophila me ( 147) 554 108.4 4.9e-22 gi|193912034|gb|EDW10901.1| GI14057 [Drosophila mo ( 148) 554 108.4 4.9e-22 gi|194201621|gb|EDX15197.1| GD24403 [Drosophila si ( 147) 543 106.4 1.9e-21 gi|156219705|gb|EDO40583.1| predicted protein [Nem ( 142) 542 106.2 2.1e-21 gi|194128856|gb|EDW50899.1| GM26793 [Drosophila se ( 147) 542 106.2 2.2e-21 gi|190647950|gb|EDV45253.1| GG16386 [Drosophila er ( 150) 541 106.1 2.5e-21 gi|194185696|gb|EDW99307.1| GE14547 [Drosophila ya ( 150) 536 105.2 4.6e-21 gi|48094791|ref|XP_392188.1| PREDICTED: similar to ( 161) 463 92.2 4.1e-17 gi|190618198|gb|EDV33722.1| GF21695 [Drosophila an ( 139) 462 91.9 4.1e-17 gi|119627235|gb|EAX06830.1| ring finger protein 11 ( 87) 428 85.7 2e-15 gi|156548664|ref|XP_001599953.1| PREDICTED: hypoth ( 176) 416 83.8 1.5e-14 gi|190582226|gb|EDV22300.1| hypothetical protein T ( 119) 411 82.8 2e-14 gi|158591743|gb|EDP30347.1| Nedd4 WW domain-bindin ( 176) 405 81.9 5.7e-14 gi|56755025|gb|AAW25695.1| SJCHGC06094 protein [Sc ( 179) 400 81.0 1.1e-13 gi|163915460|gb|AAI57293.1| Unknown (protein for M ( 116) 371 75.6 2.8e-12 gi|3873857|emb|CAA84635.1| C. elegans protein C01G ( 170) 347 71.5 7.2e-11 gi|119887284|ref|XP_001254703.1| PREDICTED: simila ( 143) 342 70.5 1.2e-10 gi|187038711|emb|CAP22355.1| Hypothetical protein ( 170) 331 68.6 5.2e-10 gi|158273432|gb|EDO99222.1| predicted protein [Chl ( 360) 240 52.7 7.1e-05 >>gi|109475302|ref|XP_001071243.1| PREDICTED: similar to (259 aa) initn: 1196 init1: 1133 opt: 1215 Z-score: 1185.1 bits: 226.6 E(): 2.3e-57 Smith-Waterman score: 1215; 85.446% identity (89.202% similar) in 213 aa overlap (1-207:51-259) 10 20 30 bm0430 AAPRRHRGAVESPPPDPRPVARPHLANRGG :::: .::: : :::.:: .:. ::. gi|109 WELSVILIHTQVKLLASPAQHYLYCYLFTLAAPRWRRGAGE-PPPEPRAC---RLGPRGA 30 40 50 60 70 40 50 60 70 80 bm0430 PRSVRTT--PPLLS--PPPD--HAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGTE :. : . : : :: : :.:: ::::::::::::::::::::::::::::::::: gi|109 ERADRRVCGRPGHSFLPPSDLKHTPQPRKMGNCLKSPTSDDISLLHESQSDRASFGEGTE 80 90 100 110 120 130 90 100 110 120 130 140 bm0430 PDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDG 140 150 160 170 180 190 150 160 170 180 190 200 bm0430 SEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSY 200 210 220 230 240 250 bm0430 ETN ::: gi|109 ETN >>gi|12004970|gb|AAG44245.1| Nedd4 WW domain-binding pro (163 aa) initn: 1132 init1: 1132 opt: 1132 Z-score: 1107.7 bits: 211.6 E(): 4.6e-53 Smith-Waterman score: 1132; 98.137% identity (99.379% similar) in 161 aa overlap (47-207:3-163) 20 30 40 50 60 70 bm0430 PRPVARPHLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDR :.:: ::::::::::::::::::::::::: gi|120 LKHTPQPRKMGNCLKSPTSDDISLLHESQSDR 10 20 30 80 90 100 110 120 130 bm0430 ASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKG ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|120 ASFGEGTEPDQEPPPPYQEQVPVPIYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKG 40 50 60 70 80 90 140 150 160 170 180 190 bm0430 VYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 VYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPV 100 110 120 130 140 150 200 bm0430 DAALLSSYETN ::::::::::: gi|120 DAALLSSYETN 160 >>gi|21362884|sp|Q9Y3C5|RNF11_HUMAN RING finger protein (154 aa) initn: 1097 init1: 1097 opt: 1097 Z-score: 1074.3 bits: 205.3 E(): 3.4e-51 Smith-Waterman score: 1097; 100.000% identity (100.000% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::::::: gi|213 MGNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|213 YETN >>gi|30584033|gb|AAP36265.1| Homo sapiens ring finger pr (155 aa) initn: 1097 init1: 1097 opt: 1097 Z-score: 1074.3 bits: 205.3 E(): 3.4e-51 Smith-Waterman score: 1097; 100.000% identity (100.000% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::::::: gi|305 MGNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|305 YETNL >>gi|21362883|sp|Q9QYK7|RNF11_MOUSE RING finger protein (154 aa) initn: 1096 init1: 1096 opt: 1096 Z-score: 1073.3 bits: 205.1 E(): 3.8e-51 Smith-Waterman score: 1096; 99.351% identity (100.000% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::::::: gi|213 MGNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|213 EPDQEPPPPYQEQVPVPIYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|213 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|213 YETN >>gi|158259555|dbj|BAF85736.1| unnamed protein product [ (154 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1065.6 bits: 203.7 E(): 1e-50 Smith-Waterman score: 1088; 99.351% identity (99.351% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::::::: gi|158 MGNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: gi|158 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLGCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|158 YETN >>gi|149693646|ref|XP_001492343.1| PREDICTED: similar to (154 aa) initn: 1086 init1: 1086 opt: 1086 Z-score: 1063.7 bits: 203.4 E(): 1.3e-50 Smith-Waterman score: 1086; 99.351% identity (99.351% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT : :::::::::::::::::::::::::::: gi|149 MRNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|149 YETN >>gi|109476993|ref|XP_001067720.1| PREDICTED: similar to (154 aa) initn: 1083 init1: 1083 opt: 1083 Z-score: 1060.8 bits: 202.8 E(): 1.9e-50 Smith-Waterman score: 1083; 98.701% identity (99.351% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::::::: gi|109 MGNCLKSPTSDDISLLHESQSDRASFGEGT 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD :::::::::::::::::::::::::.::::::::::::::::::::::::::: :::::: gi|109 EPDQEPPPPYQEQVPVPVYHPTPSQARLATQLTEEEQIRIAQRIGLIQHLPKGGYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|109 YETN >>gi|53132254|emb|CAG31887.1| hypothetical protein [Gall (154 aa) initn: 1078 init1: 1078 opt: 1078 Z-score: 1056.0 bits: 201.9 E(): 3.6e-50 Smith-Waterman score: 1078; 97.403% identity (99.351% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::.:.:. gi|531 MGNCLKSPTSDDISLLHESQSDRASYGDGA 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|531 EPDQEPPPPYQEQVPVPVYHPTPSQTRLAKQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|531 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|531 YETN >>gi|89273822|emb|CAJ83667.1| ring finger protein 11 [Xe (154 aa) initn: 1061 init1: 1061 opt: 1061 Z-score: 1039.6 bits: 198.9 E(): 2.9e-49 Smith-Waterman score: 1061; 95.455% identity (99.351% similar) in 154 aa overlap (54-207:1-154) 30 40 50 60 70 80 bm0430 HLANRGGPRSVRTTPPLLSPPPDHAPQLRKMGNCLKSPTSDDISLLHESQSDRASFGEGT :::::::::::::::::::::::::.:.:. gi|892 MGNCLKSPTSDDISLLHESQSDRASYGDGN 10 20 30 90 100 110 120 130 140 bm0430 EPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD . :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|892 DGDQEPPPPYQEQAPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRD 40 50 60 70 80 90 150 160 170 180 190 200 bm0430 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSS ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|892 GSEKKIRECVICMMDFVYGDPIRFLPCMHIYHMDCIDDWLMRSFTCPSCMEPVDAALLSS 100 110 120 130 140 150 bm0430 YETN :::: gi|892 YETN 207 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 19:09:53 2008 done: Thu Aug 7 19:12:46 2008 Total Scan time: 646.600 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]