hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19142867/chunk_1/iprscan-20080807-19142867.nocrc
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Query sequence: bm04309
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           31.7    9.4e-11   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           33.5    6.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1     152   192 ..     1    50 []    31.7  9.4e-11
PF00097.15.ls   1/1     152   192 ..     1    50 []    33.5  6.7e-07

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 152 to 192: score 31.7, E = 9.4e-11
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC++ +       + +lpC+H      ++ +C+  wl   +++tC
     bm04309   152    CVICMMDFVYGD--PIRFLPCMHI-----YHLDCIDDWLM--RSFTC 189  

                   plC<-*
                   p C   
     bm04309   190 PSC    192  

PF00097.15.ls: domain 1 of 1, from 152 to 192: score 33.5, E = 6.7e-07
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C IC++ +       + +lpC+H      ++ +C+  wl   +++tC
     bm04309   152    CVICMMDFVYGD--PIRFLPCMHI-----YHLDCIDDWLM--RSFTC 189  

                   plC<-*
                   p C   
     bm04309   190 PSC    192  

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