hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-19201065/chunk_1/iprscan-20080807-19201065.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04335 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01853.9.ls MOZ/SAS family 503.8 1.8e-148 1 PF01853.9.fs MOZ/SAS family 501.9 7e-148 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01853.9.fs 1/1 220 412 .. 1 193 [] 501.9 7e-148 PF01853.9.ls 1/1 220 412 .. 1 193 [] 503.8 1.8e-148 Alignments of top-scoring domains: PF01853.9.fs: domain 1 of 1, from 220 to 412: score 501.9, E = 7e-148 *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY lrhPPGnEIYRkg+iS+FE+DGrk+k+Y QnLCLLAK+FLDhKtLYY bm04335 220 LRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYY 266 DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY D+dpFLFY++te+D+kG+HiVGYFSKEKes+e+YN+ACILtLPpYQR+GY bm04335 267 DTDPFLFYVMTEYDCKGFHIVGYFSKEKESTEDYNVACILTLPPYQRRGY 316 GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg GklLI+FSYeLS++Egk+G+PEKPLSDLGlLSYrsYWsqt+le+L+++k+ bm04335 317 GKLLIEFSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMGLKS 366 ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-* e+ge+++iti+e+S+ T+i++eD+isTLq+Ln+i+yykgq+i +l+ bm04335 367 ESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLS 412 PF01853.9.ls: domain 1 of 1, from 220 to 412: score 503.8, E = 1.8e-148 *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY lrhPPGnEIYRkg+iS+FE+DGrk+k+Y QnLCLLAK+FLDhKtLYY bm04335 220 LRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDHKTLYY 266 DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY D+dpFLFY++te+D+kG+HiVGYFSKEKes+e+YN+ACILtLPpYQR+GY bm04335 267 DTDPFLFYVMTEYDCKGFHIVGYFSKEKESTEDYNVACILTLPPYQRRGY 316 GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg GklLI+FSYeLS++Egk+G+PEKPLSDLGlLSYrsYWsqt+le+L+++k+ bm04335 317 GKLLIEFSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMGLKS 366 ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-* e+ge+++iti+e+S+ T+i++eD+isTLq+Ln+i+yykgq+i +l+ bm04335 367 ESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTLS 412 //