hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19262086/chunk_1/iprscan-20080807-19262086.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm04359
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01534.7.fs Frizzled/Smoothened family membrane region     618.6   4.9e-183   1
PF01534.7.ls Frizzled/Smoothened family membrane region     591.2   9.1e-175   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01534.7.fs   1/1      23   302 ..     1   293 [.   618.6 4.9e-183
PF01534.7.ls   1/1      23   328 .]     1   343 []   591.2 9.1e-175

Alignments of top-scoring domains:
PF01534.7.fs: domain 1 of 1, from 23 to 302: score 618.6, E = 4.9e-183
                   *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP
                      m+F++dE++fa+s+ig++S++C+++TLFT+lTFLID++ RFrYPERP
     bm04359    23    MYFKSDELEFAKSFIGTVSIFCLCATLFTFLTFLIDVR-RFRYPERP 68   

                   IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent
                   Ii++S+CY ivSl+Y+ig++l  ++s+aC+ka+e+++  +tv  gs +n+
     bm04359    69 IIYYSVCYSIVSLMYFIGFLL--GDSTACNKADEKLELGDTVVLGS-QNK 115  

                   sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl
                   +CtvlF+llYFF+MA++vWWViLt+TWFLAAg+KW+ +EAIe+k+ +FH+
     bm04359   116 ACTVLFMLLYFFTMAGTVWWVILTITWFLAAGRKWS-CEAIEQKAVWFHA 164  

                   aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL
                   +AWg+P++lT+++LalnkV+GD++sG+CfVG+++lda r+FVL+PLcl++
     bm04359   165 VAWGTPGFLTVMLLALNKVEGDNISGVCFVGLYDLDASRYFVLLPLCLCV 214  

                   viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP
                   ++G s+LlaG++SL+++R+vi++dg  ++++KL+K+M+RIGvFs+LY+VP
     bm04359   215 FVGLSLLLAGIISLNHVRQVIQHDG--RNQEKLKKFMIRIGVFSGLYLVP 262  

                   aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkdks<-*
                   ++++++Cy+YEq+nr +We++w++++c+qy+      iPcP+++k+   
     bm04359   263 LVTLLGCYVYEQVNRITWEITWVSDHCRQYH------IPCPYQVKA    302  

PF01534.7.ls: domain 1 of 1, from 23 to 328: score 591.2, E = 9.1e-175
                   *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP
                      m+F++dE++fa+s+ig++S++C+++TLFT+lTFLID++ RFrYPERP
     bm04359    23    MYFKSDELEFAKSFIGTVSIFCLCATLFTFLTFLIDVR-RFRYPERP 68   

                   IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent
                   Ii++S+CY ivSl+Y+ig++l  ++s+aC+ka+e+++  +tv  gs +n+
     bm04359    69 IIYYSVCYSIVSLMYFIGFLL--GDSTACNKADEKLELGDTVVLGS-QNK 115  

                   sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl
                   +CtvlF+llYFF+MA++vWWViLt+TWFLAAg+KW+ +EAIe+k+ +FH+
     bm04359   116 ACTVLFMLLYFFTMAGTVWWVILTITWFLAAGRKWS-CEAIEQKAVWFHA 164  

                   aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL
                   +AWg+P++lT+++LalnkV+GD++sG+CfVG+++lda r+FVL+PLcl++
     bm04359   165 VAWGTPGFLTVMLLALNKVEGDNISGVCFVGLYDLDASRYFVLLPLCLCV 214  

                   viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP
                   ++G s+LlaG++SL+++R+vi++dg  ++++KL+K+M+RIGvFs+LY+VP
     bm04359   215 FVGLSLLLAGIISLNHVRQVIQHDG--RNQEKLKKFMIRIGVFSGLYLVP 262  

                   aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkdksgdpe
                   ++++++Cy+YEq+nr +We++w++++c+qy+      iPcP+++k+    
     bm04359   263 LVTLLGCYVYEQVNRITWEITWVSDHCRQYH------IPCPYQVKAIT-- 304  

                   arPeslaVfmlKylmsLvVGItsgvWVwSsKTl....esWrrfirrlcgr
                                            W+ S  T++ +++sW+ +++ +c++
     bm04359   305 -------------------------WIMSLFTFnvenVSWKYTCH-GCKS 328  

                   <-*
                      
     bm04359     -     -    

//