hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19382375/chunk_1/iprscan-20080807-19382375.nocrc
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Query sequence: bm04386
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07686.7.fs Immunoglobulin V-set domain                     46.0    1.8e-12   1
PF07686.7.ls Immunoglobulin V-set domain                     47.9    3.3e-11   1
PF00047.15.fs Immunoglobulin domain                           23.0    1.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.fs   1/1      43   157 ..     1   141 []    46.0  1.8e-12
PF07686.7.ls   1/1      43   157 ..     1   141 []    47.9  3.3e-11
PF00047.15.fs   1/1      58   141 ..     1    65 []    23.0  1.5e-05

Alignments of top-scoring domains:
PF07686.7.fs: domain 1 of 1, from 43 to 157: score 46.0, E = 1.8e-12
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      q+ v + p +            ++++ +G+ v+LpC  s    +  +
     bm04386    43    QFRVIG-PRH------------PIRALVGDEVELPCRIS---PGK-N 72   

                   ssgtfsiyWyrqqppgkgpeliii.syysyystsegngtvgerfkgrvtl
                    +g+ ++ Wyr  p          + +  y +  +++g+  ++++gr++l
     bm04386    73 ATGM-EVGWYR-PPF--------SrVVHLYRNGKDQDGDQAPEYRGRTEL 112  

                   sgnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                     +  + g+++L+I+n++ sD+G  +C   ++  ++ ++ ++L V+   
     bm04386   113 LKDAIgEGKVTLRIRNVRFSDEGGFTCFFRDH-SYQEEAAMELKVE    157  

PF07686.7.ls: domain 1 of 1, from 43 to 157: score 47.9, E = 3.3e-11
                   *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss
                      q+ v + p +            ++++ +G+ v+LpC  s    +  +
     bm04386    43    QFRVIG-PRH------------PIRALVGDEVELPCRIS---PGK-N 72   

                   ssgtfsiyWyrqqppgkgpeliii.syysyystsegngtvgerfkgrvtl
                    +g+ ++ Wyr  p          + +  y +  +++g+  ++++gr++l
     bm04386    73 ATGM-EVGWYR-PPF--------SrVVHLYRNGKDQDGDQAPEYRGRTEL 112  

                   sgnps.kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-*
                     +  + g+++L+I+n++ sD+G  +C   ++  ++ ++ ++L V+   
     bm04386   113 LKDAIgEGKVTLRIRNVRFSDEGGFTCFFRDH-SYQEEAAMELKVE    157  

PF00047.15.fs: domain 1 of 1, from 58 to 141: score 23.0, E = 1.5e-05
                   *->GesvtLtCsvs.gfgppdvtvtWlrngk.lt.gvlvtssenngdsty
                      G+ v L+C+ s+g +  + +v W+r   +   + +     ++gd+ +
     bm04386    58    GDEVELPCRISpGKNATGMEVGWYRPPFsRVvHLYRNGKDQDGDQAP 104  

                   qt................sLtitnvtpeDggtYtCvv<-*
                    ++++++  ++  ++++ +L+i+nv+ +D+g +tC     
     bm04386   105 EYrgrtellkdaigegkvTLRIRNVRFSDEGGFTCFF    141  

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