hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19382375/chunk_1/iprscan-20080807-19382375.nocrc
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Query sequence: bm04386
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00406                                                  66.1    4.5e-15   1
SM00409                                                  45.8    5.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      50   157 ..     1    58 []    45.8  5.8e-09
SM00406    1/1      60   141 ..     1    76 []    66.1  4.5e-15

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 50 to 157: score 45.8, E = 5.8e-09
                   *->pp.vtvkeGesvtLtC.as........titWy...............
                        ++ + +G+ v+L+C++s++++ ++ ++ Wy+++ ++  +  ++++
     bm04386    50    RHpIRALVGDEVELPCrISpgknatgmEVGWYrppfsrvvhlyrngk 96   

                   ...........................LtI.nvtpeDsesgGtYtCaat.
                   ++++++ +  ++++   ++  + ++ +L+I+nv+++D+   G +tC  ++
     bm04386    97 dqdgdqapeyrgrtellkdaigegkvtLRIrNVRFSDE---GGFTCFFRd 143  

                   .sgsasseqgttLtVl<-*
                   +s + ++    +L+V+   
     bm04386   144 hSYQEEA--AMELKVE    157  

SM00406: domain 1 of 1, from 60 to 141: score 66.1, E = 4.5e-15
                   *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy.......
                       v+L+C+ S++++ ++ +v+W+r p       +++ +l+++++++++
     bm04386    60    EVELPCRISPGKNatgmEVGWYRPP------FSRVVHLYRngkdqdg 100  

                   ....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                   ++ ++y+gR ++ kd +   + + v+L+i+n+r +D+g ++C++   
     bm04386   101 dqapEYRGRTELLKDAI---GEGKVTLRIRNVRFSDEGGFTCFF    141  

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