hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19441709/chunk_1/iprscan-20080807-19441709.nocrc
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Query sequence: bm04451
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00777.9.fs    Glycosyltransferase family 29 (sialyl   134.4    8.8e-39   1
PF00777.9.ls    Glycosyltransferase family 29 (sialyl   113.9    4.3e-31   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00777.9.ls      1/1      32   319 ..     1   327 []   113.9  4.3e-31
PF00777.9.fs      1/1      99   319 ..    80   327 .]   134.4  8.8e-39

Alignments of top-scoring domains:
PF00777.9.ls: domain 1 of 1, from 32 to 319: score 113.9, E = 4.3e-31
                   *->Crrkfs..laCvFlckwalfrslfnlslpvLlrkapataaLwstlsq
                       rr  s+++     ++ a f  lf l +   l   +      +++  
     bm04451    32    -RREMSsnKE----QRSAVFVILFALITILILYSSNS----ANEVF- 68   

                   kktPyGlkfksek.......viasgltLlneeesrdLpedlrylpkqCkr
                   ++    l++ s+ + + ++ +i++g   + +          + lp+ C+ 
     bm04451    69 HYGS--LRGRSRRpvnlkkwSITDGYVPILG---------NKTLPSRCHQ 107  

                   CAVVGNGGILkGSrlGaeIdaaDyVfRlNgApiseGfeeDVGtKTSFYGF
                   C++V+++  L+G  lG+eI  a++ +R+N Ap+  G++ DVG+KT     
     bm04451   108 CVIVSSSSHLLGTKLGPEIERAECTIRMNDAPT-TGYSADVGNKT----- 151  

                   TvrtvkpslvplldlgltsvPqgqlyrvilikslivvwlqarsakrglpv
                   T r+v +s+v   ++      + q ++    +++   w++   +++  + 
     bm04451   152 TYRVVAHSSVFRVLR------RPQEFVNRTPETVFIFWGPPSKMQKPQGS 195  

                   WselvdklqraekyFGPelspkkvyllhPdfisylteiiLqyflksglin
                      lv   qra        +    y   P  +   +     +  ++g+ +
     bm04451   196 ---LVRVIQRAGLV----FPNMEAYAVSPGRMRQFDDL---FRGETGKDR 235  

                   krfgdlyvpSTGlilvvtALhLCdEVslyGFitdsYCsnkskls.viydH
                    ++ +   +STG++++v A +LCd V++yG++   YCs  ++l +++y H
     bm04451   236 EKSHS--WLSTGWFTMVIAVELCDHVHVYGMVPPNYCSQRPRLQrMPY-H 282  

                   YFerqkldelifyalHdlslEaklllhLhkaGilkvysrt<-*
                   Y+e +  de+  y   + s       h  ++++++v+s +   
     bm04451   283 YYEPKGPDECVTYIQNEHSRKG---NHHRFITEKRVFSSW    319  

PF00777.9.fs: domain 1 of 1, from 99 to 319: score 134.4, E = 8.8e-39
                   *->rylpkqCkrCAVVGNGGILkGSrlGaeIdaaDyVfRlNgApiseGfe
                      + lp+ C+ C++V+++  L+G  lG+eI  a++ +R+N Ap+  G++
     bm04451    99    KTLPSRCHQCVIVSSSSHLLGTKLGPEIERAECTIRMNDAPT-TGYS 144  

                   eDVGtKTSFYGFTvrtvkpslvplldlgltsvPqgqlyrvilikslivvw
                    DVG+KT     T r+v +s+v   ++      + q ++    +++   w
     bm04451   145 ADVGNKT-----TYRVVAHSSVFRVLR------RPQEFVNRTPETVFIFW 183  

                   lqarsakrglpvWselvdklqraekyFGPelspkkvyllhPdfisyltei
                   ++   +++  +    lv   qra        +    y   P  +   +  
     bm04451   184 GPPSKMQKPQGS---LVRVIQRAGLV----FPNMEAYAVSPGRMRQFDDL 226  

                   iLqyflksglinkrfgdlyvpSTGlilvvtALhLCdEVslyGFitdsYCs
                      +  ++g+ + ++ +   +STG++++v A +LCd V++yG++   YCs
     bm04451   227 ---FRGETGKDREKSHS--WLSTGWFTMVIAVELCDHVHVYGMVPPNYCS 271  

                   nkskls.viydHYFerqkldelifyalHdlslEaklllhLhkaGilkvys
                     ++l +++y HY+e +  de+  y   + s       h  ++++++v+s
     bm04451   272 QRPRLQrMPY-HYYEPKGPDECVTYIQNEHSRKG---NHHRFITEKRVFS 317  

                   rt<-*
                    +   
     bm04451   318 SW    319  

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