hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-19502173/chunk_1/iprscan-20080807-19502173.nocrc
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Query sequence: bm04489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00226.21.fs DnaJ domain                                    135.5    1.2e-39   1
PF00226.21.ls DnaJ domain                                    137.3    3.8e-38   1
PF01556.9.fs DnaJ C terminal region                          63.2    3.4e-17   1
PF01556.9.ls DnaJ C terminal region                          58.8    1.6e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00226.21.fs   1/1      14    75 ..     1    76 []   135.5  1.2e-39
PF00226.21.ls   1/1      14    75 ..     1    76 []   137.3  3.8e-38
PF01556.9.ls   1/1     226   348 ..     1   123 []    58.8  1.6e-14
PF01556.9.fs   1/1     252   348 ..    28   123 .]    63.2  3.4e-17

Alignments of top-scoring domains:
PF00226.21.fs: domain 1 of 1, from 14 to 75: score 135.5, E = 1.2e-39
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyY+ LG+ r+AsdeeIK+AYR++Al+yHPDKN++++          
     bm04489    14    DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG---------- 50   

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                       AeekFkei+eAY+vLSDp kR+i+D   
     bm04489    51 ----AEEKFKEIAEAYDVLSDPRKREIFD    75   

PF00226.21.ls: domain 1 of 1, from 14 to 75: score 137.3, E = 3.8e-38
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyY+ LG+ r+AsdeeIK+AYR++Al+yHPDKN++++          
     bm04489    14    DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG---------- 50   

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                       AeekFkei+eAY+vLSDp kR+i+D   
     bm04489    51 ----AEEKFKEIAEAYDVLSDPRKREIFD    75   

PF01556.9.ls: domain 1 of 1, from 226 to 348: score 58.8, E = 1.6e-14
                   *->qrlRlaGeGeaGenGGppGDLYVvirVkeHkiFeRdGdDLycevpis
                      +++ +++eG++  n   p D   v++ k+H+iF+RdG D+++ + is
     bm04489   226    TKITFPKEGDQTSNN-IPADIVFVLKDKPHNIFKRDGSDVIYPARIS 271  

                   ftqAaLGgeveVPTLdG.kvkLkIPaGTQsGkvfrLkGKGvpklnrgsgr
                   + +A +G++v VPTLdG+ + +       +G +  + G+G p +     r
     bm04489   272 LREALCGCTVNVPTLDGrTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKR 321  

                   GDLyVhVkVetPkkLseeQkeLLeela<-*
                   GDL+++++V  P+++ +  + +Le+     
     bm04489   322 GDLIIEFEVIFPERIPQTSRTVLEQVL    348  

PF01556.9.fs: domain 1 of 1, from 252 to 348: score 63.2, E = 3.4e-17
                   *->keHkiFeRdGdDLycevpisftqAaLGgeveVPTLdG.kvkLkIPaG
                      k+H+iF+RdG D+++ + is+ +A +G++v VPTLdG+ + +     
     bm04489   252    KPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGrTIPVVFKDV 298  

                   TQsGkvfrLkGKGvpklnrgsgrGDLyVhVkVetPkkLseeQkeLLeela
                     +G +  + G+G p +     rGDL+++++V  P+++ +  + +Le+  
     bm04489   299 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 348  

                   <-*
                      
     bm04489     -     -    

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