hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-19555507/chunk_1/iprscan-20080807-19555507.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04495 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01602.10.fs Adaptin N terminal region 252.5 8e-73 1 PF01602.10.ls Adaptin N terminal region 252.0 1.1e-72 1 PF02985.12.ls HEAT repeat 54.1 4.2e-13 5 PF02985.12.fs HEAT repeat 50.2 4.5e-13 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01602.10.ls 1/1 39 558 .. 1 630 [] 252.0 1.1e-72 PF01602.10.fs 1/1 62 558 .. 28 630 .] 252.5 8e-73 PF02985.12.ls 2/5 147 183 .. 1 36 [] 12.8 1.1 PF02985.12.ls 3/5 186 222 .. 1 36 [] 16.0 0.12 Alignments of top-scoring domains: PF01602.10.ls: domain 1 of 1, from 39 to 558: score 252.0, E = 1.1e-72 *->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf e+ + +el+++l ++ d + ++ ++++i +++G d+s bm04495 39 EDVV--KELKKALCNPHIQA--DRLRYRNVIQRVIRYMTQG-LDMSG 80 lfaevvklvaskkdfelKrlgLRrmVYLylkllaeespDGklhlaiLatn f+e vk a+ + + +K+l+ YLy +a +pD la+La+n bm04495 81 VFMEMVKASATVD-IVQKKLV-----YLYMCTYAPLKPD----LALLAIN 120 tikkDLqspNplirglALrtLssirvpelardlapdikkllvdespnpyV t+ kD+++pNp++rglALr+++s+r+p +++ +i + l+d + +yV bm04495 121 TLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRD--KASYV 168 RKkAalailkLyrkdpelvernglvedlkelLslDsnpgVvsaAVaalde R+ A+l +k++ + + ++ lv++l +lL D++p+Vv + + l+e bm04495 169 RRVAVLGCAKMHNLHGDSEVDGALVNELYSLLR-DQDPIVVVNCLRSLEE 217 ickqnpdllllfrDlklvplLvrfvrllrklltalsdlnewggnsvpqpf i kq +++ ++ + ll+ +s l+ wg q bm04495 218 ILKQEGGVV-----------INK--PIAHHLLNRMSKLDQWG-----QAE 249 llvkLiklLrlylrkdlvepdprlGlngkdlserltfilqlvntkvelsk +l+ L+ r y +++ +e d+ +l+ l + + v++ bm04495 250 VLNFLL---R-YQPRSEEEL--------FDILNLLDSFLKSSSPGVVM-- 285 vqhknvsnavlfelaltisdldsapelivlainkLlvlLlssdpnlrYva +++ lf ++ + ++++ ++v+ +Ll ++s++++l +va bm04495 286 ------GATKLFLILAKMFP-HVQTDVLVRVKGPLLAACSSESRELCFVA 328 LrnlnkivmsekrpskeeglekavqrhrlkiffclstdddisIrlraLdl L +++i+ p ++ + k ffc + + +I+l ++++ bm04495 329 LCHVRQILH--SLP--------GHFSSHYKKFFCSY-SEPHYIKLQKVEV 367 LykLvdesNvkeivkeLkeyveeadndehedtfvkiavvaiirlacekdn L Lv+++Nv +++ eL y ++++ d f+ +a+ ai+ +a + bm04495 368 LCELVNDENVQQVLEELRGYCTDVSAD-----FAQAAIFAIGGIARTY-- 410 YqfptdaewcidvLleLLkltagsyvvaeaivvqiidiirkyPelreyaV ++c+ +L eLL ++++++ ++ ++d++ +P+ e bm04495 411 ------TDQCVQILTELLG-LRQEHITTVVVQT-FRDLVWLCPQCTEA-- 450 sqiitlLaallesiesmpearaaaiWilGEygelipdiapceesepseve + + L e+i++ e ++a iW+lG +ge+ip +ap bm04495 451 --VCQALPGCEENIQD-SEGKQALIWLLGVHGERIP-NAP---------- 486 sdidllreiaenfslen.levraqlLtalvKLgltkpdikqQeeiqpvee +l+ ++en+ +e+ ++v+++lLta+ +L+l p + ++ bm04495 487 ---YVLEDFVENVKSETfPAVKMELLTASLRLFLSRPAE--------CQD 525 liqsvlslalnssdnelElRDRAreylrllslad<-* +++ +l ++ ++ + +RDR +y rll + bm04495 526 MLGRLLYYCIEEEKD-MAVRDRGLFYYRLLLVGI 558 PF01602.10.fs: domain 1 of 1, from 62 to 558: score 252.5, E = 8e-73 *->kdavkKliylimlGnedisflfaevvklvaskkdfelKrlgLRrmVY ++ ++++i +++G d+s f+e vk a+ + + +K+l+ Y bm04495 62 RNVIQRVIRYMTQG-LDMSGVFMEMVKASATVD-IVQKKLV-----Y 101 LylkllaeespDGklhlaiLatntikkDLqspNplirglALrtLssirvp Ly +a +pD la+La+nt+ kD+++pNp++rglALr+++s+r+p bm04495 102 LYMCTYAPLKPD----LALLAINTLCKDCSDPNPMVRGLALRSMCSLRMP 147 elardlapdikkllvdespnpyVRKkAalailkLyrkdpelvernglved +++ +i + l+d + +yVR+ A+l +k++ + + ++ lv++ bm04495 148 GVQEYIQQPILNGLRD--KASYVRRVAVLGCAKMHNLHGDSEVDGALVNE 195 lkelLslDsnpgVvsaAVaaldeickqnpdllllfrDlklvplLvrfvrl l +lL D++p+Vv + + l+ei kq +++ ++ bm04495 196 LYSLLR-DQDPIVVVNCLRSLEEILKQEGGVV-----------INK--PI 231 lrklltalsdlnewggnsvpqpfllvkLiklLrlylrkdlvepdprlGln + ll+ +s l+ wg q +l+ L+ r y +++ +e bm04495 232 AHHLLNRMSKLDQWG-----QAEVLNFLL---R-YQPRSEEEL------- 265 gkdlserltfilqlvntkvelskvqhknvsnavlfelaltisdldsapel d+ +l+ l + + v++ +++ lf ++ + ++++ + bm04495 266 -FDILNLLDSFLKSSSPGVVM--------GATKLFLILAKMFP-HVQTDV 305 ivlainkLlvlLlssdpnlrYvaLrnlnkivmsekrpskeeglekavqrh +v+ +Ll ++s++++l +vaL +++i+ p ++ bm04495 306 LVRVKGPLLAACSSESRELCFVALCHVRQILH--SLP--------GHFSS 345 rlkiffclstdddisIrlraLdlLykLvdesNvkeivkeLkeyveeadnd + k ffc + + +I+l ++++L Lv+++Nv +++ eL y ++++ d bm04495 346 HYKKFFCSY-SEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSAD 394 ehedtfvkiavvaiirlacekdnYqfptdaewcidvLleLLkltagsyvv f+ +a+ ai+ +a + ++c+ +L eLL ++++++ bm04495 395 -----FAQAAIFAIGGIARTY--------TDQCVQILTELLG-LRQEHIT 430 aeaivvqiidiirkyPelreyaVsqiitlLaallesiesmpearaaaiWi ++ ++d++ +P+ e + + L e+i++ e ++a iW+ bm04495 431 TVVVQT-FRDLVWLCPQCTEA----VCQALPGCEENIQD-SEGKQALIWL 474 lGEygelipdiapceesepsevesdidllreiaenfslen.levraqlLt lG +ge+ip +ap +l+ ++en+ +e+ ++v+++lLt bm04495 475 LGVHGERIP-NAP-------------YVLEDFVENVKSETfPAVKMELLT 510 alvKLgltkpdikqQeeiqpveeliqsvlslalnssdnelElRDRAreyl a+ +L+l p + +++++ +l ++ ++ + +RDR +y bm04495 511 ASLRLFLSRPAE--------CQDMLGRLLYYCIEEEKD-MAVRDRGLFYY 551 rllslad<-* rll + bm04495 552 RLLLVGI 558 PF02985.12.ls: domain 2 of 5, from 147 to 183: score 12.8, E = 1.1 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* ++++++ +++l++l+D+ + VR+ A+ +++ + + bm04495 147 PgVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLH 183 PF02985.12.ls: domain 3 of 5, from 186 to 222: score 16.0, E = 0.12 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++ l++ l +ll+D+dp V +++++L +++++ bm04495 186 SeVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQE 222 //