hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20014304/chunk_1/iprscan-20080807-20014304.nocrc
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Query sequence: bm04544
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00118.14.ls TCP-1/cpn60 chaperonin family                645.3   4.5e-191   1
PF00118.14.fs TCP-1/cpn60 chaperonin family                643.2   1.9e-190   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00118.14.fs   1/1      79   574 .]     1   537 []   643.2 1.9e-190
PF00118.14.ls   1/1      79   574 .]     1   537 []   645.3 4.5e-191

Alignments of top-scoring domains:
PF00118.14.fs: domain 1 of 1, from 79 to 574: score 643.2, E = 1.9e-190
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      +ad+++t+LGPkG++Km+++g+ Gd+tiTnDGaTIlk +++ hP   
     bm04544    79    VADAIRTSLGPKGMDKMIQDGK-GDVTITNDGATILKQMQVLHP--- 121  

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                    +A +lve+sk Qd e+GDGTT+vv++Ag LL  + kL+++G+hPt I +
     bm04544   122 -AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISE 170  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   ++ +A+ek +e+L  +s+pve +d+   e ll+ A+tslnsKv+s++s +
     bm04544   171 SFQKALEKGIEILTDMSRPVELSDR---ETLLNSATTSLNSKVVSQYSSL 217  

                   dAlakvgvdavitveeekndk.ysfdldnievvkglGgsifdsglisGyv
                     l++++v+av++v +++    +s+dl +i++vk+lGg+i d++l++G+v
     bm04544   218 --LSPMSVNAVMKVIDPA--TaTSVDLRDIKIVKKLGGTIDDCELVEGLV 263  

                   itkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasde
                   +t ++++    + ++r+e+ aKI ++++ L+   +kt ++   + +++++
     bm04544   264 LTQKVSN----SGITRVEK-AKIGLIQFCLS--APKTDMD-NQIVVSDYA 305  

                   dleaLstlEenklkgkvkviavkkRvcdgpnvvitqke....gidDiAlh
                   ++++ +++E+ ++ + vk+i+++     g+nv + qk+  ++ ++D+Alh
     bm04544   306 QMDRVLREERAYILNLVKQIKKT-----GCNVLLIQKSilrdALSDLALH 350  

                   tladtvisdkagImalrrvskedlgrlakvlgakvvttligpgagsedee
                   +l+      k++Im+++++++ed+++++k++g+k+v++++  +     ++
     bm04544   351 FLN------KMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFT-----AD 389  

                   eiGerdevlekeigdstsddkvtkleerkarLsgkvatIllRGateveld
                   ++G++   +e+ + +   + k+ k++++ +   gk++tI++RG+++++++
     bm04544   390 MLGSAELAEEVNLNG---SGKLLKITGCAS--PGKTVTIVVRGSNKLVIE 434  

                   ElerrieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeq
                   E+er+i+DAl++++++++ +++++GGGa Eiela++L++y   +l+g+e 
     bm04544   435 EAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY-SRTLSGMES 483  

                   laveafakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGyda
                   ++v+afa+A+eviP +LAeNAGl++i+++++Lr++ha+G+   k  G+++
     bm04544   484 YCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE---KTAGINV 530  

                   atgkivdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                   ++g+i +++e  ++ pl V  +al+lAte++  iL+iDd+ ++ +   
     bm04544   531 RKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV-VNTR    574  

PF00118.14.ls: domain 1 of 1, from 79 to 574: score 645.3, E = 4.5e-191
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      +ad+++t+LGPkG++Km+++g+ Gd+tiTnDGaTIlk +++ hP   
     bm04544    79    VADAIRTSLGPKGMDKMIQDGK-GDVTITNDGATILKQMQVLHP--- 121  

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                    +A +lve+sk Qd e+GDGTT+vv++Ag LL  + kL+++G+hPt I +
     bm04544   122 -AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISE 170  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   ++ +A+ek +e+L  +s+pve +d+   e ll+ A+tslnsKv+s++s +
     bm04544   171 SFQKALEKGIEILTDMSRPVELSDR---ETLLNSATTSLNSKVVSQYSSL 217  

                   dAlakvgvdavitveeekndk.ysfdldnievvkglGgsifdsglisGyv
                     l++++v+av++v +++    +s+dl +i++vk+lGg+i d++l++G+v
     bm04544   218 --LSPMSVNAVMKVIDPA--TaTSVDLRDIKIVKKLGGTIDDCELVEGLV 263  

                   itkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasde
                   +t ++++    + ++r+e+ aKI ++++ L+   +kt ++   + +++++
     bm04544   264 LTQKVSN----SGITRVEK-AKIGLIQFCLS--APKTDMD-NQIVVSDYA 305  

                   dleaLstlEenklkgkvkviavkkRvcdgpnvvitqke....gidDiAlh
                   ++++ +++E+ ++ + vk+i+++     g+nv + qk+  ++ ++D+Alh
     bm04544   306 QMDRVLREERAYILNLVKQIKKT-----GCNVLLIQKSilrdALSDLALH 350  

                   tladtvisdkagImalrrvskedlgrlakvlgakvvttligpgagsedee
                   +l+      k++Im+++++++ed+++++k++g+k+v++++  +     ++
     bm04544   351 FLN------KMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFT-----AD 389  

                   eiGerdevlekeigdstsddkvtkleerkarLsgkvatIllRGateveld
                   ++G++   +e+ + +   + k+ k++++ +   gk++tI++RG+++++++
     bm04544   390 MLGSAELAEEVNLNG---SGKLLKITGCAS--PGKTVTIVVRGSNKLVIE 434  

                   ElerrieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeq
                   E+er+i+DAl++++++++ +++++GGGa Eiela++L++y   +l+g+e 
     bm04544   435 EAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEY-SRTLSGMES 483  

                   laveafakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGyda
                   ++v+afa+A+eviP +LAeNAGl++i+++++Lr++ha+G+   k  G+++
     bm04544   484 YCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE---KTAGINV 530  

                   atgkivdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                   ++g+i +++e  ++ pl V  +al+lAte++  iL+iDd+ ++ +   
     bm04544   531 RKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDV-VNTR    574  

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