hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20014304/chunk_1/iprscan-20080807-20014304.nocrc
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Query sequence: bm04544
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
TIGR02342      chap_CCT_delta: T-complex protein 1, d  1420.2          0   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
TIGR02342        1/1      59   574 .]     1   526 []  1420.2        0

Alignments of top-scoring domains:
TIGR02342: domain 1 of 1, from 59 to 574: score 1420.2, E = 0
                   *->fkdkdKpedVRtsNIvAAKaVADaiRTSLGPrGMDKmIqdgkGeViI
                      ++d+dKp+++R+sNI+AAKaVADaiRTSLGP+GMDKmIqdgkG+V+I
     bm04544    59    YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTI 105  

                   TNDGATILkqMevlHPaAkmLVElSkAQDiEAGDGTTSVVilAGALLdAc
                   TNDGATILkqM+vlHPaA+mLVElSkAQDiEAGDGTTSVVi+AG+LLd+c
     bm04544   106 TNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSC 155  

                   ekLLekGIHPtiISesFqsAadeAikiLdemsipvdLsetfteqdRelLi
                   +kLL+kGIHPtiISesFq+A++++i+iL++ms+pv+Ls      dRe+L+
     bm04544   156 TKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELS------DRETLL 199  

                   ksAtTSLsSKvvSQySslLAPlAVdAVlkviDpendknVdLkDIkvVKKl
                   +sAtTSL+SKvvSQySslL+P++V+AV+kviDp+++++VdL+DIk+VKKl
     bm04544   200 NSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKL 249  

                   GGTIdDtELieGlVltqkasksaGgptRiekAKIgLIQFqlSpPKTdmeN
                   GGTIdD+EL+eGlVltqk+s  ++g+tR+ekAKIgLIQF+lS+PKTdm+N
     bm04544   250 GGTIDDCELVEGLVLTQKVS--NSGITRVEKAKIGLIQFCLSAPKTDMDN 297  

                   qvivnDYaQMDRvLkEERkYiLnivkkIkKtGcNVlLIQKSILRDAvndL
                   q++v+DYaQMDRvL+EER+YiLn+vk+IkKtGcNVlLIQKSILRDA++dL
     bm04544   298 QIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDL 347  

                   ALHFLaKmkImVVKDIEREevEFisktlGckPiAsidhftadkLGkAeLv
                   ALHFL+KmkImV+KDIERE++EFi+kt+G+kP+A+id+ftad+LG+AeL+
     bm04544   348 ALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELA 397  

                   EEVktsddskiiKitGvqnnnagkTVtvlvRGSNkLvidEAERSLHDALC
                   EEV++++++k++KitG+++  +gkTVt++vRGSNkLvi+EAERS+HDALC
     bm04544   398 EEVNLNGSGKLLKITGCAS--PGKTVTIVVRGSNKLVIEEAERSIHDALC 445  

                   VIRsLVKkraLiaGGGAPEiEiAlkLsklartlkGvesycvRaFAdALEv
                   VIR+LVKkraLiaGGGAPEiE+Al+L++++rtl+G+esycvRaFAdA+Ev
     bm04544   446 VIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEV 495  

                   IPyTLAENAGLnPIkvVTeLRnrHanGektaGisVrkggitdmlEEeVlQ
                   IP+TLAENAGLnPI++VTeLRnrHa+GektaGi+Vrkggi+++lEE V+Q
     bm04544   496 IPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQ 545  

                   PlLVttSAvTlAsEtVrsILKIDDivftr<-*
                   PlLV++SA+TlA+EtVrsILKIDD+v+tr   
     bm04544   546 PLLVSVSALTLATETVRSILKIDDVVNTR    574  

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