hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20074589/chunk_1/iprscan-20080807-20074589.nocrc
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Query sequence: bm04548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00835.10.fs SNAP-25 family                                  88.2    2.2e-24   1
PF05739.9.fs SNARE domain                                    89.3    4.9e-24   2
PF00835.10.ls SNAP-25 family                                  89.9    7.4e-24   1
PF05739.9.ls SNARE domain                                    71.7    2.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00835.10.fs   1/1     104   154 ..     1    73 []    88.2  2.2e-24
PF00835.10.ls   1/1     104   154 ..     1    73 []    89.9  7.4e-24
PF05739.9.fs   2/2     158   217 ..     1    63 []    69.7  1.4e-18
PF05739.9.ls   1/1     158   217 ..     1    63 []    71.7  2.2e-18

Alignments of top-scoring domains:
PF00835.10.fs: domain 1 of 1, from 104 to 154: score 88.2, E = 2.2e-24
                   *->PwnKLkepiknfksgedkkkawkaNddekreaeGKVvssqPrsrveD
                      P+nK    +k++    ++kkaw++N+d      G Vv+sqP +rv D
     bm04548   104    PCNK----LKSSD---AYKKAWGNNQD------G-VVASQP-ARVVD 135  

                   YDrepmselagpsggYIQPqRITNDA<-*
                    +re+m+    +sgg+I  +R+TNDA   
     bm04548   136 -EREQMA----ISGGFI--RRVTNDA    154  

PF00835.10.ls: domain 1 of 1, from 104 to 154: score 89.9, E = 7.4e-24
                   *->PwnKLkepiknfksgedkkkawkaNddekreaeGKVvssqPrsrveD
                      P+nK    +k++    ++kkaw++N+d      G Vv+sqP +rv D
     bm04548   104    PCNK----LKSSD---AYKKAWGNNQD------G-VVASQP-ARVVD 135  

                   YDrepmselagpsggYIQPqRITNDA<-*
                    +re+m+    +sgg+I  +R+TNDA   
     bm04548   136 -EREQMA----ISGGFI--RRVTNDA    154  

PF05739.9.fs: domain 2 of 2, from 158 to 217: score 69.7, E = 1.4e-18
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      e+de+le+++++ig+L++++ld+g+e++ Q++++DrI ++++++ +r
     bm04548   158    EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTR 204  

                   verankrLkkaaryqk<-*
                   +++an+r++k+    +   
     bm04548   205 IDEANQRATKM---LG    217  

PF05739.9.ls: domain 1 of 1, from 158 to 217: score 71.7, E = 2.2e-18
                   *->eRdeeleelessigeLkqlfldlgteVeeQgellDrIddnventqsr
                      e+de+le+++++ig+L++++ld+g+e++ Q++++DrI ++++++ +r
     bm04548   158    EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTR 204  

                   verankrLkkaaryqk<-*
                   +++an+r++k+    +   
     bm04548   205 IDEANQRATKM---LG    217  

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