hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20074589/chunk_1/iprscan-20080807-20074589.nocrc
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Query sequence: bm04548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00397                                                 135.1    7.6e-36   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00397    1/2      27    94 ..     1    68 []    56.6  3.1e-12
SM00397    2/2     148   215 ..     1    68 []    78.5  8.5e-19

Alignments of top-scoring domains:
SM00397: domain 1 of 2, from 27 to 94: score 56.6, E = 3.1e-12
                   *->llqqndameqerdeeleqlersiqelkqifldlgteveeQgeqldrI
                       ++++d++ +e+ e+++++++ ++e k+ +++++++++eQgeql+rI
     bm04548    27    MQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 73   

                   ednvdntdvnlkkankqLkka<-*
                   e+ +d+++ ++k+a+k+L+ +   
     bm04548    74 EEGMDQINKDMKEAEKNLTDL    94   

SM00397: domain 2 of 2, from 148 to 215: score 78.5, E = 8.5e-19
                   *->llqqndameqerdeeleqlersiqelkqifldlgteveeQgeqldrI
                       + +nda+e+e+de+leq++++i++l++++ld+g+e+++Q+ q+drI
     bm04548   148    RRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI 194  

                   ednvdntdvnlkkankqLkka<-*
                    +++d++++++++an++++k+   
     bm04548   195 MEKADSNKTRIDEANQRATKM    215  

//