hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-20132553/chunk_1/iprscan-20080807-20132553.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04566 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00012.10.ls Hsp70 protein 1380.5 0 1 PF00012.10.fs Hsp70 protein 1378.6 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00012.10.fs 1/1 74 680 .. 1 618 [] 1378.6 0 PF00012.10.ls 1/1 74 680 .. 1 618 [] 1380.5 0 Alignments of top-scoring domains: PF00012.10.fs: domain 1 of 1, from 74 to 680: score 1378.6, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV +iGIDLGTT+ScV+V+++gk+e+IaN++GnRtTPS+VAFt++ ErL+ bm04566 74 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLI 119 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G+aAK+Q++ Np+NTvf++KRlIGR+f dp+Vqsd+kh+P++v++d +++ bm04566 120 GDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIND-GDK 168 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF ++v+v+y+G +k f PeeIS+mvL+K+Ke+AEayLG +Vt+AVITVPAYF bm04566 169 PKVQVSYKGDTKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYF 218 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG IAGLnVlRIiNEPTAAA+AYGLD ++++ ern+l bm04566 219 NDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKG----ERNVL 264 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk +fDLGGGTFDVSiL+i+dG+FEVkaT+GDThLGGeDFDnrlv+h+veeFk bm04566 265 IFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFK 314 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +k+++D+s +krA++RLr+a+E+AK++LSs +t+++L+++++++ G ++ bm04566 315 RKHKKDISQNKRAVRRLRTACERAKRTLSS--STQASLEIDSLFE-G-ID 360 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR +++++tRA+FEeL++dLf+ tlePvekaL+DAkl+k +I++ vLVGGsTR bm04566 361 FYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTR 410 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsG..seeVkDvl IP+Vq+l+++fF+G++++k++NPDEAVA+GAAvQA++L G++se V+D+l bm04566 411 IPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGdkSENVQDLL 460 LLDVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqV LLDV PLSLG+ET+GGvmt lI+RN TIPtk qiF+T++DNQ++V IqV bm04566 461 LLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQV 510 lqGERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkD ++GER+++kDN+lLG+FeL+GIpPAPrGvPQIeVtFdIDANGIlnV+A D bm04566 511 YEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATD 560 kgtgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNea k+tgk +kItIt+++grLs++EIe Mv++AEky++eD+ ++er+ akN + bm04566 561 KSTGKANKITITNDKGRLSKEEIESMVQEAEKYKAEDEVQRERVSAKNAL 610 Eslvystekslkeeklgdkvseadkekl.kkveeaiewLkealegeddAe Es+++++++++++e l++k+seadk+k+ +k+ e+i wL+++ +Ae bm04566 611 ESYAFNMKSAVEDEGLKGKISEADKKKVlDKCQEVISWLDAN----TLAE 656 keeikakteeLqkvvqkigekmyq<-* k+e+++k++eL++v+++i++ +yq bm04566 657 KDEFEHKRKELEQVCNPIISGLYQ 680 PF00012.10.ls: domain 1 of 1, from 74 to 680: score 1380.5, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV +iGIDLGTT+ScV+V+++gk+e+IaN++GnRtTPS+VAFt++ ErL+ bm04566 74 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLI 119 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G+aAK+Q++ Np+NTvf++KRlIGR+f dp+Vqsd+kh+P++v++d +++ bm04566 120 GDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVIND-GDK 168 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF ++v+v+y+G +k f PeeIS+mvL+K+Ke+AEayLG +Vt+AVITVPAYF bm04566 169 PKVQVSYKGDTKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYF 218 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG IAGLnVlRIiNEPTAAA+AYGLD ++++ ern+l bm04566 219 NDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKG----ERNVL 264 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk +fDLGGGTFDVSiL+i+dG+FEVkaT+GDThLGGeDFDnrlv+h+veeFk bm04566 265 IFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFK 314 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +k+++D+s +krA++RLr+a+E+AK++LSs +t+++L+++++++ G ++ bm04566 315 RKHKKDISQNKRAVRRLRTACERAKRTLSS--STQASLEIDSLFE-G-ID 360 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR +++++tRA+FEeL++dLf+ tlePvekaL+DAkl+k +I++ vLVGGsTR bm04566 361 FYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTR 410 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsG..seeVkDvl IP+Vq+l+++fF+G++++k++NPDEAVA+GAAvQA++L G++se V+D+l bm04566 411 IPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGdkSENVQDLL 460 LLDVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqV LLDV PLSLG+ET+GGvmt lI+RN TIPtk qiF+T++DNQ++V IqV bm04566 461 LLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQV 510 lqGERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkD ++GER+++kDN+lLG+FeL+GIpPAPrGvPQIeVtFdIDANGIlnV+A D bm04566 511 YEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATD 560 kgtgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNea k+tgk +kItIt+++grLs++EIe Mv++AEky++eD+ ++er+ akN + bm04566 561 KSTGKANKITITNDKGRLSKEEIESMVQEAEKYKAEDEVQRERVSAKNAL 610 Eslvystekslkeeklgdkvseadkekl.kkveeaiewLkealegeddAe Es+++++++++++e l++k+seadk+k+ +k+ e+i wL+++ +Ae bm04566 611 ESYAFNMKSAVEDEGLKGKISEADKKKVlDKCQEVISWLDAN----TLAE 656 keeikakteeLqkvvqkigekmyq<-* k+e+++k++eL++v+++i++ +yq bm04566 657 KDEFEHKRKELEQVCNPIISGLYQ 680 //