hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-20190331/chunk_1/iprscan-20080807-20190331.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04567 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00493.13.ls MCM2/3/5 family 688.9 3.4e-204 1 PF00493.13.fs MCM2/3/5 family 687.0 1.3e-203 1 PF01078.11.ls Magnesium chelatase, subunit ChlI -117.3 4.9e-05 1 PF07728.4.ls ATPase family associated with various ce 4.0 0.00081 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00493.13.fs 1/1 192 514 .. 1 374 [] 687.0 1.3e-203 PF00493.13.ls 1/1 192 514 .. 1 374 [] 688.9 3.4e-204 PF01078.11.ls 1/1 215 401 .. 1 209 [] -117.3 4.9e-05 PF07728.4.ls 1/1 248 395 .. 1 184 [] 4.0 0.00081 Alignments of top-scoring domains: PF00493.13.fs: domain 1 of 1, from 192 to 514: score 687.0, E = 1.3e-203 *->deeeirelakdpdiyeklarSIAPsIyGhedvKkAilLqLFGGvrKn +ee+r++a++ d yekla+SIAP+IyGhedvKkA+lL+L+GGv + bm04567 192 TREELRQIAEE-DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVD-Q 236 lpdgtrlRGDINvLLvGDPGkTAKSQLLKyveklaPRaVYTsGkGSSAaG +p g+++RG+IN++L+GDPG +AKSQLL y+ +laPR++YT+G+GSS++G bm04567 237 SPRGMKIRGNINICLMGDPG-VAKSQLLSYIDRLAPRSQYTTGRGSSGVG 285 LTAaVvrDpetgEwtLEaGALVLADgGvCCIDEFDKMdesDRvAIHEAME LTAaV rD+++gE tLE+GALVLAD+GvCCIDEFDKM e DR+AIHE+ME bm04567 286 LTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVME 335 QQTISIAKAGIvatLNARtSvLAAANPigGRYdpsktlaeNInLpppLLS QQTISIAKAGI +tLNAR+S+LAAANP++GRY+p+++l +NI+Lp++LLS bm04567 336 QQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 385 RFDLiFvllDkpdeekDerLAeHivslHrkgepeqedeeggllvagdeks RFDL++++ D+pd+++D rLA+Hi+++H+++ bm04567 386 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHS------------------- 416 veesvetepyveDllskrdntledkeidgeidpelLrkYIaYARenvkPk +++ +++ep +d+ l+r+YIa++R + P bm04567 417 RQPPSQFEP---------------------LDMKLMRRYIAMCR-EKQPM 444 LseeAsekLvdaYvelRkegeqEsltgsssrssipITvRQLESlIRLSEA ++e++++++ aYve+R+e+ +s+++ + ++R L++++RLS A bm04567 445 VPESLADYITAAYVEMRREAW-------ASKDATYTSARTLLAILRLSTA 487 hAklrLseiVteeDVeeAirLlkeSlk<-* +A+lr ++V++eDV+eAirL+++S+ bm04567 488 LARLRMVDVVEKEDVNEAIRLMEMSKD 514 PF00493.13.ls: domain 1 of 1, from 192 to 514: score 688.9, E = 3.4e-204 *->deeeirelakdpdiyeklarSIAPsIyGhedvKkAilLqLFGGvrKn +ee+r++a++ d yekla+SIAP+IyGhedvKkA+lL+L+GGv + bm04567 192 TREELRQIAEE-DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVD-Q 236 lpdgtrlRGDINvLLvGDPGkTAKSQLLKyveklaPRaVYTsGkGSSAaG +p g+++RG+IN++L+GDPG +AKSQLL y+ +laPR++YT+G+GSS++G bm04567 237 SPRGMKIRGNINICLMGDPG-VAKSQLLSYIDRLAPRSQYTTGRGSSGVG 285 LTAaVvrDpetgEwtLEaGALVLADgGvCCIDEFDKMdesDRvAIHEAME LTAaV rD+++gE tLE+GALVLAD+GvCCIDEFDKM e DR+AIHE+ME bm04567 286 LTAAVLRDSVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVME 335 QQTISIAKAGIvatLNARtSvLAAANPigGRYdpsktlaeNInLpppLLS QQTISIAKAGI +tLNAR+S+LAAANP++GRY+p+++l +NI+Lp++LLS bm04567 336 QQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNIQLPAALLS 385 RFDLiFvllDkpdeekDerLAeHivslHrkgepeqedeeggllvagdeks RFDL++++ D+pd+++D rLA+Hi+++H+++ bm04567 386 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHS------------------- 416 veesvetepyveDllskrdntledkeidgeidpelLrkYIaYARenvkPk +++ +++ep +d+ l+r+YIa++R + P bm04567 417 RQPPSQFEP---------------------LDMKLMRRYIAMCR-EKQPM 444 LseeAsekLvdaYvelRkegeqEsltgsssrssipITvRQLESlIRLSEA ++e++++++ aYve+R+e+ +s+++ + ++R L++++RLS A bm04567 445 VPESLADYITAAYVEMRREAW-------ASKDATYTSARTLLAILRLSTA 487 hAklrLseiVteeDVeeAirLlkeSlk<-* +A+lr ++V++eDV+eAirL+++S+ bm04567 488 LARLRMVDVVEKEDVNEAIRLMEMSKD 514 PF01078.11.ls: domain 1 of 1, from 215 to 401: score -117.3, E = 4.9e-05 *->DlaDVkGQeqAKRALEIAAAGgH.............NLLmiGPPGsG ++ G+e +K+AL Gg ++++++ + +++ N+ ++G PG bm04567 215 ---EIYGHEDVKKALLLLLVGGVdqsprgmkirgniNICLMGDPGVA 258 KtMLAkRLpgILPPLseeEaLEvtaihSvaGllggdgglirrRPFRaPHH K+ L + + + P+ ++ +G g g ++ R bm04567 259 KSQLLSYIDRLAPRSQYT-----------TG-RGSSGVGLTAAVLRD--- 293 saSaaALvGGGsgiprPGEISLAHnGVLFLDE...lPEFsrrvL.EsLRq s+S G G+ LA +GV DE ++++E +r +++E+ bm04567 294 SVS------GEL-TLEGGALVLADQGVCCIDEfdkMAEADRTAIhEV--- 333 PLEdGevtIsRaaakvtyPArFqLVAAmNPCPCGylgdpdkrCrCsprqi +E + I+ a +t Ar+ AA+NP y ++r ++ i bm04567 334 -MEQQTISIAKAGILTTLNARCSILAAANP---AYGRYNPRRSL--EQNI 377 rrYlsrlSGPLLDRIDlqveVprlsaeeL<-* + l LL R+Dl ++ + + bm04567 378 Q-----LPAALLSRFDLLWLIQDRPDRDN 401 PF07728.4.ls: domain 1 of 1, from 248 to 395: score 4.0, E = 0.00081 *->gvlLvGpPGtGKselaerlaealsgqggrplfy.......vqltrdt +++L G+PG++Ks+l ++ ++ +r+ ++++++++v lt+ bm04567 248 NICLMGDPGVAKSQLLSYIDRLA----PRSQYTtgrgssgVGLTAAV 290 teedLlgrrdiapllhGngttswvdgpLvrAaryaretegslpeghivvl ++ + g +++ g+Lv A + ++++ bm04567 291 LRDSVSGELTLEG------------GALVLADQ------------GVCCI 316 DEinraspevlnaLlslLderrlllpdggelvkvapydklaergreeldl DE+++ + a + +++ ++++ g l ++ bm04567 317 DEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNAR------------- 353 wklgrlihdfrliataNpld......gprgln.elsaALrrRFlfvtvdp +++a+aNp++++ +++ + ++n l aAL++RF++ ++ bm04567 354 ---------CSILAAANPAYgrynprRSLEQNiQLPAALLSRFDLLWLIQ 394 p<-* bm04567 395 D 395 //