hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-20190331/chunk_1/iprscan-20080807-20190331.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04567 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00350 1074.1 0 1 SM00382 27.7 0.0016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00350 1/1 17 514 .. 1 591 [] 1074.1 0 SM00382 1/1 245 398 .. 1 92 [] 27.7 0.0016 Alignments of top-scoring domains: SM00350: domain 1 of 1, from 17 to 514: score 1074.1, E = 0 *->kplsiReLradhlgkLVrvsGiVTRtSeVrPklkrasftCekCgatl kp+ iRe+rad +gkLV+v+GiVTR+SeV+Pk+++a++tC++Cga++ bm04567 17 KPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGAET 63 rpeiqdYsgreteptvCppesCqsptsdgGkkkCendPfslnheraSkFi ++ iq s +++++++Cp+++Cq+++s+g +++++r+S+Fi bm04567 64 YQPIQ--SPTFMPLIMCPSQECQTNRSGG---------RLYLQTRGSRFI 102 DfQkiklQEsPeeVPaGqlPRsvdvildgdLVDkvkPGDrVevTGIyrnv +fQ++k+QE++++VP+G++PRs++v ++g++++ ++PGD+V vTGI++++ bm04567 103 KFQEMKMQEHSDQVPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIFLPI 152 PdrtgfklntakglpkgdnRGivfaTyieanhVrkldikrsfeacsiieg + rtgf+++++++l++ Ty+ea++++k +++s bm04567 153 L-RTGFRQVVQGLLSE---------TYLEAHRIVK--MNKS--------- 181 dasqeeeeqDekdevsslsdeeeeeirklskdSpdIyekLskSlAPSIYG e+++ s + +ee+r ++++ +d+yekL++S+AP+IYG bm04567 182 -----EDDE------SGAGELTREELR-QIAE-EDFYEKLAASIAPEIYG 218 hedIKKAILLlLfGGveKnlpdgmikiRGDINiLLlGDPGTAKSQlLKYV hed+KKA+LLlL+GGv++ +p+gm kiRG+INi+L+GDPG+AKSQlL Y+ bm04567 219 HEDVKKALLLLLVGGVDQ-SPRGM-KIRGNINICLMGDPGVAKSQLLSYI 266 ekvAPRAVYTtGKGSSAVGLTAaVtrDpeTrEftLEgGALVLADnGVCCI ++APR++YTtG+GSS+VGLTAaV rD++++E+tLEgGALVLAD+GVCCI bm04567 267 DRLAPRSQYTTGRGSSGVGLTAAVLRDSVSGELTLEGGALVLADQGVCCI 316 DEFDKMddsDRtAIHEaMEQQTISIAKAGItTtLNARcSvLAAANPigGR DEFDKM ++DRtAIHE+MEQQTISIAKAGI TtLNARcS+LAAANP++GR bm04567 317 DEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGR 366 YdpkltpaeNIdLpapiLSRFDLlFvVlDevDeerDreLAkHVvdlHrrs Y+p++++++NI+Lpa++LSRFDLl++++D++D+++D++LA+H++++H++s bm04567 367 YNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHS 416 hPgedegeaLplGeadieetedeevsAaegeedqEqiaekhdnLlqvkei + ++ +++e+ + bm04567 417 R----------------QPPSQFEP------------------------L 426 siefLrkYIaYARekikPkLseeaaeklvkaYvdlRkedsqseaDskrsS +++++r+YIa++Re ++P+++e +a++++ aYv++R+e ++ ++D++++S bm04567 427 DMKLMRRYIAMCRE-KQPMVPESLADYITAAYVEMRRE-AWASKDATYTS 474 iPITvRqLESiIRLsEAlAKlrLsdvVeeaDVeeAirLlreSii<-* +R+L++i+RLs+AlA+lr++dvVe++DV+eAirL+++S+ bm04567 475 ----ARTLLAILRLSTALARLRMVDVVEKEDVNEAIRLMEMSKD 514 SM00382: domain 1 of 1, from 245 to 398: score 27.7, E = 0.0016 *->pgevvllvGppGsGKTTlaralarllgp..........gviyidge. + +++l+G pG+ K+ l+ + rl+++++ +++++++gv + ++ bm04567 245 GNINICLMGDPGVAKSQLLSYIDRLAPRsqyttgrgssGVGLTAAVl 291 .....ggqrir.lalalarkdvlllDEitslld................. +++ +g+ ++++al la ++v +DE ++++ ++ ++ +++ + bm04567 292 rdsvsGELTLEgGALVLADQGVCCIDEFDKMAEadrtaihevmeqqtisi 341 ............vtviattn...............dldpallrrrfdrri + + + ++ +++++a++n+ ++ +++++ ++++ +pa+l +rfd bm04567 342 akagilttlnarCSILAAANpaygrynprrsleqnIQLPAALLSRFDLLW 391 vl.lril<-* +++r++ bm04567 392 LIqDRPD 398 //