hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00260784/chunk_1/iprscan-20090618-00260784.nocrc
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Query sequence: bm04585
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       155.4    1.4e-43   1
PF00270.19.fs DEAD/DEAH box helicase                       153.6    4.8e-43   1
PF00271.21.fs Helicase conserved C-terminal domain         112.2    3.8e-32   1
PF00271.21.ls Helicase conserved C-terminal domain         114.2    3.5e-31   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1     147   315 ..     1   213 []   153.6  4.8e-43
PF00270.19.ls   1/1     147   315 ..     1   213 []   155.4  1.4e-43
PF00271.21.fs   1/1     383   465 ..     1    76 []   112.2  3.8e-32
PF00271.21.ls   1/1     383   465 ..     1    76 []   114.2  3.5e-31

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 147 to 315: score 153.6, E = 4.8e-43
                RF    xxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx
                   *->tpiQaeaipaile..GrDvlvqApTGSGKTlafllPilqallk.pen
                      ++iQ+ a+p+ l+++++++++q++ G+GKT+af+l++l ++ +    
     bm04585   147    SKIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVEPaN-- 191  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   nqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellgl
                              + pq+l+l+PT eLa+Q+ ++++++gk+         +l
     bm04585   192 -----------KYPQCLCLSPTYELALQTGKVIEQMGKF-------YPEL 223  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkr
                   k a +++G + ++ +++             +I++gTPg +ld      k 
     bm04585   224 KLAYAVRGNKLERGQKIS-----------EQIVIGTPGTVLDWC---SKL 259  

                RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   egasldlknlkllVlDEAhrll.dmkGfgedleeilrrlprpklrrlsqd
                    +  +d k++k++VlDEA+ +   + G++++  +i r+lp ++       
     bm04585   260 -KF-IDPKKIKVFVLDEADVMIaTQ-GHQDQSIRIQRMLP-RN------- 298  

                RF xxxxxxxxxxxxxxxxxxxx   
                   lpnrqtllfSATlprnvedl<-*
                      +q llfSAT+ ++v ++   
     bm04585   299 ---CQMLLFSATFEDSVWKF    315  

PF00270.19.ls: domain 1 of 1, from 147 to 315: score 155.4, E = 1.4e-43
                RF    xxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx
                   *->tpiQaeaipaile..GrDvlvqApTGSGKTlafllPilqallk.pen
                      ++iQ+ a+p+ l+++++++++q++ G+GKT+af+l++l ++ +    
     bm04585   147    SKIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVEPaN-- 191  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   nqeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellgl
                              + pq+l+l+PT eLa+Q+ ++++++gk+         +l
     bm04585   192 -----------KYPQCLCLSPTYELALQTGKVIEQMGKF-------YPEL 223  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kvallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkr
                   k a +++G + ++ +++             +I++gTPg +ld      k 
     bm04585   224 KLAYAVRGNKLERGQKIS-----------EQIVIGTPGTVLDWC---SKL 259  

                RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxx
                   egasldlknlkllVlDEAhrll.dmkGfgedleeilrrlprpklrrlsqd
                    +  +d k++k++VlDEA+ +   + G++++  +i r+lp ++       
     bm04585   260 -KF-IDPKKIKVFVLDEADVMIaTQ-GHQDQSIRIQRMLP-RN------- 298  

                RF xxxxxxxxxxxxxxxxxxxx   
                   lpnrqtllfSATlprnvedl<-*
                      +q llfSAT+ ++v ++   
     bm04585   299 ---CQMLLFSATFEDSVWKF    315  

PF00271.21.fs: domain 1 of 1, from 383 to 465: score 112.2, E = 3.8e-32
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l+++g++va l G+++ e+R +++e+Fr+gk kvLv+T+v++rGiD
     bm04585   383    ELsKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 429  

                   ipdvnlVInydlpwnpes......yiQRiGRaGRaG<-*
                   + +v++VIn+dlp + + ++++++y++RiGR+GR+G   
     bm04585   430 VEQVSVVINFDLPVDKDGnpdnetYLHRIGRTGRFG    465  

PF00271.21.ls: domain 1 of 1, from 383 to 465: score 114.2, E = 3.5e-31
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +l+++g++va l G+++ e+R +++e+Fr+gk kvLv+T+v++rGiD
     bm04585   383    ELsKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 429  

                   ipdvnlVInydlpwnpes......yiQRiGRaGRaG<-*
                   + +v++VIn+dlp + + ++++++y++RiGR+GR+G   
     bm04585   430 VEQVSVVINFDLPVDKDGnpdnetYLHRIGRTGRFG    465  

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