hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00260784/chunk_1/iprscan-20090618-00260784.nocrc
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Query sequence: bm04585
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 161.9    6.6e-44   1
SM00490                                                 113.2    2.9e-29   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     142   341 ..     1   219 []   161.9  6.6e-44
SM00490      1/1     378   465 ..     1    86 []   113.2  2.9e-29

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 142 to 341: score 161.9, E = 6.6e-44
                   *->gf.klrpyQkeaipwlleg..rdvilaapTGsGKTlafllpllellk
                      gf++++++Q+ a+p +l  +++++i++ + G+GKT+af+l++l ++ 
     bm04585   142    GFnRPSKIQENALPLMLAEppQNLIAQSQSGTGKTAAFVLAMLSQVE 188  

                   kgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvv
                   + +       k+p++L+l+Pt eLa Q+ ++++++g+++++     lk +
     bm04585   189 PAN-------KYPQCLCLSPTYELALQTGKVIEQMGKFYPE-----LKLA 226  

                   glygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldl
                   + + G++      ++ + +s+  +i+++Tpg++ld  ++ k+++ +++++
     bm04585   227 YAVRGnKL-----ERGQKISE--QIVIGTPGTVLDWCsKLKFIDPkKIKV 269  

                   vilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eien
                   ++lDEa++++  +     g++dq  ++ + lp+n+q+ll+SAT+ + + +
     bm04585   270 FVLDEADVMIATQ-----GHQDQSIrIQRMLPRNCQMLLFSATFEdSVWK 314  

                   llklflnlpelfpnpvfisvgf.tlepieqf<-*
                   ++++   +p    n++ ++ +++tl+ i+q+   
     bm04585   315 FAQKVVPDP----NVIKLKREEeTLDTIKQY    341  

SM00490: domain 1 of 1, from 378 to 465: score 113.2, E = 2.9e-29
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       +la +L+++    g+ va l G+++ e+R +++e+Fr+gk kvLv+
     bm04585   378    SWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 420  

                   TdvaerGlDipgvdlVInydl......pwspasyiQRiGRaGRaG<-*
                   T+v +rG+D+ +v++VIn+dl+ ++++  + ++y++RiGR+GR+G   
     bm04585   421 TNVCARGIDVEQVSVVINFDLpvdkdgNPDNETYLHRIGRTGRFG    465  

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