hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-20304786/chunk_1/iprscan-20080807-20304786.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04608 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 408.8 5.1e-131 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 410.6 2.1e-120 1 PF06337.3.ls Domain of Unknown Function (DUF1055) 311.9 1.1e-90 1 PF06337.3.fs Domain of Unknown Function (DUF1055) 309.9 4.2e-90 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06337.3.fs 1/1 104 246 .. 1 147 [] 309.9 4.2e-90 PF06337.3.ls 1/1 104 246 .. 1 147 [] 311.9 1.1e-90 PF00443.19.fs 1/1 266 887 .. 1 318 [] 408.8 5.1e-131 PF00443.19.ls 1/1 266 887 .. 1 318 [] 410.6 2.1e-120 Alignments of top-scoring domains: PF06337.3.fs: domain 1 of 1, from 104 to 246: score 309.9, E = 4.2e-90 *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq +Lke+L+Eg+DYvL+P+++W++LvsWYgle+G+PpieRKVIe++++q bm04608 104 RLKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ 150 ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe k VEVYp+eL+L++++D++ks+T+++S++dsIg+++r+++e+f+ve++ bm04608 151 K---VEVYPVELLLVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQ 197 ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq ++tR+W++++++++++L+d++ +Tv+dA+L+++Q+I++E+rk+DGtw+S+ bm04608 198 EDTRLWAKNSEGSLDRLYDTH-ITVLDAALETGQLIIMETRKKDGTWPSA 246 <-* bm04608 - - PF06337.3.ls: domain 1 of 1, from 104 to 246: score 311.9, E = 1.1e-90 *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq +Lke+L+Eg+DYvL+P+++W++LvsWYgle+G+PpieRKVIe++++q bm04608 104 RLKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQ 150 ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe k VEVYp+eL+L++++D++ks+T+++S++dsIg+++r+++e+f+ve++ bm04608 151 K---VEVYPVELLLVRHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQ 197 ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq ++tR+W++++++++++L+d++ +Tv+dA+L+++Q+I++E+rk+DGtw+S+ bm04608 198 EDTRLWAKNSEGSLDRLYDTH-ITVLDAALETGQLIIMETRKKDGTWPSA 246 <-* bm04608 - - PF00443.19.fs: domain 1 of 1, from 266 to 887: score 408.8, E = 5.1e-131 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg++GL NlGNTC+mNS+LQcL+++p l++yfl++ y e+n +npl bm04608 266 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPL 312 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+kg++++a+adL+++ +sg+++s++p fk+ +g+++++f gy bm04608 313 GMKGEIAEAYADLVKQAWSGhHRSIVPHV------FKNKVGHFASQFLGY 356 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh +Q+D++E+l fLLdgLhedlnrv+kk+y e ++ +rpd+++a+eaw nh bm04608 357 QQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDqEVAqEAWQNH 406 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ ++rn+s+i+d F+G +ks+ ++++++ + + ++ + + + + ++++ bm04608 407 KRRNDSVIVDTFHGLFKStlvcpdcgnvsvtfdpfcylsvplpishkrvl 456 RF .................................................. + + ++++++++++ +++++ ++ + +++++ ++++ + bm04608 457 evffipmdprrkpeqhrlvvpkkgkisdlcvalskhtgispermmvadvf 506 RF .................................................. +++ + + +++ ++ ++++ + +++ + ++++++ + ++ bm04608 507 shrfyklyqleeplssildrddifvyevsgrieaiegsredivvpvylre 556 RF .................................................. +++ ++ +++ + +++ + ++++ + ++ + + ++ +++ bm04608 557 rtpardynnsyyglmlfghpllvsvprdrftweglynvlmyrlsryvtkp 606 RF .................................................. ++++++++++++++++++++ ++++++++ +++++++ +++++ +++++ bm04608 607 nsddeddgdekeddeedkddvpgpstggslrdpepeqagpssgvtnrcpf 656 RF .................................................. +++ ++++ ++++++++ + ++ ++++++++++++++ + ++ + bm04608 657 lldnclgtsqwpprrrrkqlftlqtvnsngtsdrttspeevhaqpyiaid 706 RF .................................................. +++ +++ ++ + ++ ++++ + ++ + + +++ + ++ ++ ++ bm04608 707 wepemkkryydeveaegyvkhdcvgyvmkkapvrlqecielfttvetlek 756 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .................klkikrLPpvLiihLKRFsyngetglnkKiddk +++ ++++++++ ++kl+++ LP++LiihLKRFsy + +++K+d+ bm04608 757 enpwycpsckqhqlatkKLDLWMLPEILIIHLKRFSYTKF--SREKLDTL 804 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx VefPleLdlssycnaelkekevlrkdekieklkeerqrdedgnneeepee VefP++++++s+++ ++ bm04608 805 VEFPIRDLDFSEFVIQPQN------------------------------- 823 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eedneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDD e+++ +kY+L+aV++H+G ++ +GHY+++++ +k+ g+W++fDD bm04608 824 -----ESNPELYKYDLIAVSNHYG-GMRDGHYTTFAC-NKDSGQWHYFDD 866 RF xxxxxxxxxxxxxxxxxxxxxxx ekVsevteeevlersssAYiLFY<-* +Vs+v+e ++ +s++AY+LFY bm04608 867 NSVSPVNENQI--ESKAAYVLFY 887 PF00443.19.ls: domain 1 of 1, from 266 to 887: score 410.6, E = 2.1e-120 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg++GL NlGNTC+mNS+LQcL+++p l++yfl++ y e+n +npl bm04608 266 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPL 312 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g+kg++++a+adL+++ +sg+++s++p fk+ +g+++++f gy bm04608 313 GMKGEIAEAYADLVKQAWSGhHRSIVPHV------FKNKVGHFASQFLGY 356 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh +Q+D++E+l fLLdgLhedlnrv+kk+y e ++ +rpd+++a+eaw nh bm04608 357 QQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDqEVAqEAWQNH 406 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ ++rn+s+i+d F+G +ks+ ++++++ + + ++ + + + + ++++ bm04608 407 KRRNDSVIVDTFHGLFKStlvcpdcgnvsvtfdpfcylsvplpishkrvl 456 RF .................................................. + + ++++++++++ +++++ ++ + +++++ ++++ + bm04608 457 evffipmdprrkpeqhrlvvpkkgkisdlcvalskhtgispermmvadvf 506 RF .................................................. +++ + + +++ ++ ++++ + +++ + ++++++ + ++ bm04608 507 shrfyklyqleeplssildrddifvyevsgrieaiegsredivvpvylre 556 RF .................................................. +++ ++ +++ + +++ + ++++ + ++ + + ++ +++ bm04608 557 rtpardynnsyyglmlfghpllvsvprdrftweglynvlmyrlsryvtkp 606 RF .................................................. ++++++++++++++++++++ ++++++++ +++++++ +++++ +++++ bm04608 607 nsddeddgdekeddeedkddvpgpstggslrdpepeqagpssgvtnrcpf 656 RF .................................................. +++ ++++ ++++++++ + ++ ++++++++++++++ + ++ + bm04608 657 lldnclgtsqwpprrrrkqlftlqtvnsngtsdrttspeevhaqpyiaid 706 RF .................................................. +++ +++ ++ + ++ ++++ + ++ + + +++ + ++ ++ ++ bm04608 707 wepemkkryydeveaegyvkhdcvgyvmkkapvrlqecielfttvetlek 756 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .................klkikrLPpvLiihLKRFsyngetglnkKiddk +++ ++++++++ ++kl+++ LP++LiihLKRFsy + +++K+d+ bm04608 757 enpwycpsckqhqlatkKLDLWMLPEILIIHLKRFSYTKF--SREKLDTL 804 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx VefPleLdlssycnaelkekevlrkdekieklkeerqrdedgnneeepee VefP++++++s+++ ++ bm04608 805 VEFPIRDLDFSEFVIQPQN------------------------------- 823 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eedneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDD e+++ +kY+L+aV++H+G ++ +GHY+++++ +k+ g+W++fDD bm04608 824 -----ESNPELYKYDLIAVSNHYG-GMRDGHYTTFAC-NKDSGQWHYFDD 866 RF xxxxxxxxxxxxxxxxxxxxxxx ekVsevteeevlersssAYiLFY<-* +Vs+v+e ++ +s++AY+LFY bm04608 867 NSVSPVNENQI--ESKAAYVLFY 887 //