hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-20304786/chunk_1/iprscan-20080807-20304786.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04608 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00695 152.3 5.1e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00695 1/1 55 147 .. 1 114 [] 152.3 5.1e-41 Alignments of top-scoring domains: SM00695: domain 1 of 1, from 55 to 147: score 152.3, E = 5.1e-41 *->nleegdtewylIskrWyeswedfvehthtcGsaleshcassggsdgk +l+ g++ w+l++k+Wy++we++v+ +++++ + bm04608 55 PLRAGES-WFLVEKHWYKQWEAYVQ--------------GGDQDSST 86 fPGPIDNsdilcsegdsatansprlkehLvegeDYvlipeelWnkLvrwY fPG+I+N +++++e ++rlke LvegeDYvl+p+++W++Lv+wY bm04608 87 FPGCINNATLFQDEI------NWRLKEGLVEGEDYVLLPAAAWHYLVSWY 130 GggpgqepipRkvisqg<-* G+++gq+pi+Rkvi+++ bm04608 131 GLEHGQPPIERKVIELP 147 //