hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20373532/chunk_1/iprscan-20080807-20373532.nocrc
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Query sequence: bm04609
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07264.2.fs Etoposide-induced protein 2.4 (EI24)           390.8   1.9e-114   1
PF07264.2.ls Etoposide-induced protein 2.4 (EI24)           181.8    1.6e-51   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07264.2.fs   1/1      16   185 .]     1   179 [.   390.8 1.9e-114
PF07264.2.ls   1/1      16   185 .]     1   348 []   181.8  1.6e-51

Alignments of top-scoring domains:
PF07264.2.fs: domain 1 of 1, from 16 to 185: score 390.8, E = 1.9e-114
                   *->DlyrGikdSikGiPstavakireeeakkveeeadkPVERtvevlrrk
                      Dl+rGikdSi+Gi  ++++k+++++++k+ee++++   R+++vl+++
     bm04609    16    DLARGIKDSIWGI--CTISKLDARIQQKREEQRRR---RASSVLAQR 57   

                   kpaaierkpesekkKDSivkkLFqccalNgGffWlSlLlfyrvlipvLkl
                   + ++ierk+ese++   iv+++Fqcca+NgG+fW+SlLlfyrv+ipvL++
     bm04609    58 RAQSIERKQESEPR---IVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQS 104  

                   vlsifigadSEllgvVWsWLgfiLsllfgavwVLPiFvlSkiVqALWFsD
                   v++++ig++S l+g+VWsWL f+L+++f+a wVLP+FvlSk+V+A+WF+D
     bm04609   105 VTARIIGDPS-LHGDVWSWLEFFLTSIFSALWVLPLFVLSKVVNAIWFQD 153  

                   IAdaAyrvlklkPqpvpsvSklvADtLfslLl<-*
                   IAd+A++v+++kP+p+psvSk++AD+Lf+lLl   
     bm04609   154 IADLAFEVSGRKPHPFPSVSKIIADMLFNLLL    185  

PF07264.2.ls: domain 1 of 1, from 16 to 185: score 181.8, E = 1.6e-51
                   *->DlyrGikdSikGiPstavakireeeakkveeeadkPVERtvevlrrk
                      Dl+rGikdSi+Gi  ++++k+++++++k+ee++++   R+++vl+++
     bm04609    16    DLARGIKDSIWGI--CTISKLDARIQQKREEQRRR---RASSVLAQR 57   

                   kpaaierkpesekkKDSivkkLFqccalNgGffWlSlLlfyrvlipvLkl
                   + ++ierk+ese++   iv+++Fqcca+NgG+fW+SlLlfyrv+ipvL++
     bm04609    58 RAQSIERKQESEPR---IVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQS 104  

                   vlsifigadSEllgvVWsWLgfiLsllfgavwVLPiFvlSkiVqALWFsD
                   v++++ig++S l+g+VWsWL f+L+++f+a wVLP+FvlSk+V+A+WF+D
     bm04609   105 VTARIIGDPS-LHGDVWSWLEFFLTSIFSALWVLPLFVLSKVVNAIWFQD 153  

                   IAdaAyrvlklkPqpvpsvSklvADtLfslLlQiLFLiQgMLvqllPikl
                   IAd+A++v+++kP+p+psvSk++AD+Lf+lLl                  
     bm04609   154 IADLAFEVSGRKPHPFPSVSKIIADMLFNLLL------------------ 185  

                   VgsvivyLHmaLLySLYcFeYkwfnkglelhrRldiiEknWPYFfGFGlP
                                                                     
     bm04609     - -------------------------------------------------- -    

                   LAlltslsSsviVsSciFsiLFPLFIissneAktivdaylvsLRLFSlVV
                                                                     
     bm04609     - -------------------------------------------------- -    

                   FlSNWNRkyeeeiPkiafnrisymqtelvektvkeklpsrdpsaaknkaq
                                                                     
     bm04609     - -------------------------------------------------- -    

                   n<-*
                       
     bm04609     - -    -    

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