hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-20561729/chunk_1/iprscan-20080807-20561729.nocrc
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Query sequence: bm04642
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00153.17.fs Mitochondrial carrier protein                 329.7    5.9e-97   3
PF00153.17.ls Mitochondrial carrier protein                 329.8    4.5e-96   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00153.17.fs   1/3      32   128 ..     1   100 []   137.8  3.3e-40
PF00153.17.ls   1/3      32   128 ..     1   100 []   139.8  6.9e-39
PF00153.17.fs   2/3     137   231 ..     1   100 []   113.3  5.7e-33
PF00153.17.ls   2/3     137   231 ..     1   100 []   115.3  1.6e-31
PF00153.17.fs   3/3     234   323 .]     1    96 [.    78.6  1.1e-22
PF00153.17.ls   3/3     234   322 ..     1   100 []    74.7  2.7e-19

Alignments of top-scoring domains:
PF00153.17.fs: domain 1 of 3, from 32 to 128: score 137.8, E = 3.3e-40
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      sf++++laGgiA+ai++t+++P+++vK +LQ   v+ as++  ++++
     bm04642    32    SFAKDFLAGGIAAAISKTAVAPIERVKLLLQ---VQHASKQIAADKQ 75   

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Ykgi+dc+++i ke+G++++++G+l+n++r++P++a++F++ +++K+++l
     bm04642    76 YKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 125  

                   kkk<-*
                   +     
     bm04642   126 GGV    128  

PF00153.17.ls: domain 1 of 3, from 32 to 128: score 139.8, E = 6.9e-39
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      sf++++laGgiA+ai++t+++P+++vK +LQ   v+ as++  ++++
     bm04642    32    SFAKDFLAGGIAAAISKTAVAPIERVKLLLQ---VQHASKQIAADKQ 75   

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Ykgi+dc+++i ke+G++++++G+l+n++r++P++a++F++ +++K+++l
     bm04642    76 YKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 125  

                   kkk<-*
                   +     
     bm04642   126 GGV    128  

PF00153.17.fs: domain 2 of 3, from 137 to 231: score 113.3, E = 5.7e-33
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +f+ +l++Gg+AGa++ +++yPlD+++tRL         +++g  r+
     bm04642   137    YFAGNLASGGAAGATSLCFVYPLDFARTRLA-----ADVGKSGTERE 178  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   ++g+ dc++ki k++GirgLY G+++++ ++++y+a+yFg+Y+t+K +l 
     bm04642   179 FRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLP 228  

                   kkk<-*
                   + k   
     bm04642   229 DPK    231  

PF00153.17.ls: domain 2 of 3, from 137 to 231: score 115.3, E = 1.6e-31
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +f+ +l++Gg+AGa++ +++yPlD+++tRL         +++g  r+
     bm04642   137    YFAGNLASGGAAGATSLCFVYPLDFARTRLA-----ADVGKSGTERE 178  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   ++g+ dc++ki k++GirgLY G+++++ ++++y+a+yFg+Y+t+K +l 
     bm04642   179 FRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLP 228  

                   kkk<-*
                   + k   
     bm04642   229 DPK    231  

PF00153.17.fs: domain 3 of 3, from 234 to 323: score 78.6, E = 1.1e-22
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      ++++s + + +  a+a +v yP+D+v+ R++     ++s+ +g++  
     bm04642   234    HIVVSWMIAQTVTAVAGVVSYPFDTVRRRMM-----MQSGRKGADIM 275  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKkll<
                   Y+g++dc +ki++ EG ++++kG + n+lr + +a + +++Y+ lKk++ 
     bm04642   276 YTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI  323  

                   -*
                     
     bm04642     -    -    

PF00153.17.ls: domain 3 of 3, from 234 to 322: score 74.7, E = 2.7e-19
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      ++++s + + +  a+a +v yP+D+v+ R++     ++s+ +g++  
     bm04642   234    HIVVSWMIAQTVTAVAGVVSYPFDTVRRRMM-----MQSGRKGADIM 275  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Y+g++dc +ki++ EG ++++kG + n+lr + +a + +++Y+ lKk   
     bm04642   276 YTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKK--- 321  

                   kkk<-*
                         
     bm04642   322 --V    322  

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