hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21021512/chunk_1/iprscan-20080807-21021512.nocrc
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Query sequence: bm04652
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    167.8    2.6e-47   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    164.1    3.3e-46   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3     192   257 ..     1    68 [.    55.3  9.5e-15
PF00076.12.ls   1/3     192   264 ..     1    74 []    57.1  5.4e-14
PF00076.12.fs   2/3     273   334 ..     1    62 [.    38.0  6.7e-10
PF00076.12.ls   2/3     273   348 ..     1    74 []    38.0    3e-08
PF00076.12.fs   3/3     368   431 ..     1    74 []    70.8  4.2e-19
PF00076.12.ls   3/3     368   431 ..     1    74 []    72.7  1.1e-18

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 192 to 257: score 55.3, E = 9.5e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg +p+d+ e++L  lF+k Gpi + +++ D  +  g+++G+aF+
     bm04652   192    VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMD--PLSGQNRGYAFI 236  

                   eFedeedAekAldalnGkelg<-*
                   +F  +e+A++A++ ++ +e++   
     bm04652   237 TFCGKEAAQEAVKLCDSYEIR    257  

PF00076.12.ls: domain 1 of 3, from 192 to 264: score 57.1, E = 5.4e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg +p+d+ e++L  lF+k Gpi + +++ D  +  g+++G+aF+
     bm04652   192    VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMD--PLSGQNRGYAFI 236  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F  +e+A++A++ ++   +  g+ l v   
     bm04652   237 TFCGKEAAQEAVKLCDSyEIRPGKHLGV    264  

PF00076.12.fs: domain 2 of 3, from 273 to 334: score 38.0, E = 6.7e-10
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      lfVg +p++ t+e + + Fsk   + +++ + +  +  +++++Gf+F
     bm04652   273    LFVGSIPKNKTKENILEEFSKvTEGLVDVILYH-QPDDKKKNRGFCF 318  

                   VeFedeedAekAldal<-*
                    e+ed+ +A+ A + l   
     bm04652   319 LEYEDHKSAAQARRRL    334  

PF00076.12.ls: domain 2 of 3, from 273 to 348: score 38.0, E = 3e-08
                   *->lfVgNLppdtteedLkdlFsk.fGpiesikivrDttretgrskGfaF
                      lfVg +p++ t+e + + Fsk   + +++ + +  +  +++++Gf+F
     bm04652   273    LFVGSIPKNKTKENILEEFSKvTEGLVDVILYH-QPDDKKKNRGFCF 318  

                   VeFedeedAekAlda.lnG.kelggrelrv<-*
                    e+ed+ +A+ A +  + G+ ++ g++++v   
     bm04652   319 LEYEDHKSAAQARRRlMSGkVKVWGNVVTV    348  

PF00076.12.fs: domain 3 of 3, from 368 to 431: score 70.8, E = 4.2e-19
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NL + +tee L++ Fs+fG+ e++k  +D          +aFV
     bm04652   368    LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD----------YAFV 404  

                   eFedeedAekAldalnGkelggrelrv<-*
                    Fed  +A kA+d++nGke++g e+++   
     bm04652   405 HFEDRGAAVKAMDEMNGKEIEGEEIEI    431  

PF00076.12.ls: domain 3 of 3, from 368 to 431: score 72.7, E = 1.1e-18
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfV+NL + +tee L++ Fs+fG+ e++k  +D          +aFV
     bm04652   368    LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD----------YAFV 404  

                   eFedeedAekAldalnGkelggrelrv<-*
                    Fed  +A kA+d++nGke++g e+++   
     bm04652   405 HFEDRGAAVKAMDEMNGKEIEGEEIEI    431  

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