hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21021512/chunk_1/iprscan-20080807-21021512.nocrc
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Query sequence: bm04652
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor famil  1365.2          0   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR01648   1/1     131   653 ..     1   611 []  1365.2        0

Alignments of top-scoring domains:
TIGR01648: domain 1 of 1, from 131 to 653: score 1365.2, E = 0
                   *->esdeksGsssKVqegvkGapdEAaLkALveRTGYtLvqenGQRKYGG
                      +++ek+G  sKVqe++kG pdEA++kAL+eRTGYtL++++GQRKYGG
     bm04652   131    RQREKQG--SKVQESTKG-PDEAKIKALLERTGYTLDVTTGQRKYGG 174  

                   PPPgSVweGvqPerGcEVFVGKiPRDLYEDELVPLfEkvGkIYeLRLMMD
                   PPP+SV++GvqP++G+EVFVGKiPRDLYEDELVPLfEk+G+I++LRLMMD
     bm04652   175 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMD 224  

                   PfdGkNRGYAFVtFcnKeeAkeAVkelnnYEIRpGrlLGVCiSVdNcRLF
                   P++G+NRGYAF+tFc+Ke+A+eAVk++++YEIRpG++LGVCiSV+N+RLF
     bm04652   225 PLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLF 274  

                   VGgIPKtKkreeILeEisKVTEGvvdVIvYasAaDKkKNRGFAFvEYEsH
                   VG+IPK+K++e+ILeE+sKVTEG+vdVI+Y++++DKkKNRGF+F+EYE+H
     bm04652   275 VGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 324  

                   rAAAmARRkLmpGriqlWGhviaVdWAePevevDedvMakVKiLYVRNLm
                   ++AA+ARR+Lm+G++++WG+v++V+WA+P++e+D++vMakVK+L+VRNL+
     bm04652   325 KSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLA 374  

                   lettEEiieKsFsefkPGavERVKKirDYAFVHFedRedAVkAMdeLNGk
                   +++tEEi+eKsFsef  G++ERVKK++DYAFVHFedR++AVkAMde+NGk
     bm04652   375 TTVTEEILEKSFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGK 422  

                   eLeGseiEVtLAKPvDKesYvRYtkaakGrgkelqAarqYslsyVYdpas
                   e+eG+eiE++LAKP+DK+            +ke+qAarq         as
     bm04652   423 EIEGEEIEIVLAKPPDKK------------RKERQAARQ---------AS 451  

                   rslAyedYYynaliaAiPsldypakkGsirgRGrgaAgsvRGaaGgrGlg
                   rs+AyedYYy+++         p+++++irgRGrg++   R   Gg+G++
     bm04652   452 RSTAYEDYYYHPP---------PRMPPPIRGRGRGGG---R---GGYGYP 486  

                   lDYrGYeaYrglYrGYDYhekkgkredklYdlvpglElsPvnpValkPgG
                   +DY+GYe+Y+++Y+GYDYh+++g++ed++Y++++g      ++V++++gG
     bm04652   487 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDG------YAVRGRGGG 530  

                   ikaaPaileeisrFKnaaPaPvYqLHskIiedgrilflekiiiPaavsqd
                   +++++a++++++r   +aP+P          +gr          a++sq+
     bm04652   531 RGGRGAPPPPRGR---GAPPP----------RGR----------AGYSQR 557  

                   PAiAaalappkaSAaVreAkstpAeyqqrglgPvrtsaGnvqriataGak
                   +A+   l+pp++S   r+++++pA+ qqrg+g +r+s+Gn  r++++G+k
     bm04652   558 GAP---LGPPRGS---RGGRGGPAQ-QQRGRG-SRGSRGN--RGGNVGGK 597  

                   akAydGYaaPdAtarvanaqqnkaAaavAqqPLqqGgDyAGyigyevYaa
                   +kA dGY++Pd+++r++n+qqn++++++AqqPLqqGgDy+G++g   Y++
     bm04652   598 RKA-DGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYG---YNN 643  

                   FlvvdrqdvYqDTY<-*
                       d+q++YqDTY   
     bm04652   644 ----DNQEFYQDTY    653  

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