hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-21082442/chunk_1/iprscan-20080807-21082442.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04664 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03881.5.fs Fructosamine kinase 131.8 6.1e-43 3 PF01636.13.fs Phosphotransferase enzyme family 91.9 3.8e-26 1 PF03881.5.ls Fructosamine kinase 97.3 4.3e-26 1 PF01636.13.ls Phosphotransferase enzyme family 93.8 5e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01636.13.fs 1/1 7 283 .. 1 256 [] 91.9 3.8e-26 PF01636.13.ls 1/1 7 283 .. 1 256 [] 93.8 5e-25 PF03881.5.ls 1/1 8 310 .. 1 291 [] 97.3 4.3e-26 PF03881.5.fs 1/3 26 116 .. 27 119 .. 28.6 2.2e-09 PF03881.5.fs 3/3 215 300 .. 191 277 .. 94.7 7.1e-31 Alignments of top-scoring domains: PF01636.13.fs: domain 1 of 1, from 7 to 283: score 91.9, E = 3.8e-26 *->elrplsgGasnrtylvt...............tgdgdapryvlrlap el + G+s+ +++t++++++ +++++ +t++g r++++++p bm04664 7 ELLRRELGCSS--VRATghsgggcisqgrsydTDQG---RVFVKVNP 48 pgelaeelerEaavl.rhLaalgipvpvpvPrvlaggtdgeglglpflll ++e++ ++e E+a l+++L+ + + vP+++ ++d+ g g +l++ bm04664 49 KAEARRMFEGEMASLtAILKTNTV----KVPKPIK-VLDAPGGGS-VLVM 92 eglpGevlsrpdalspaerpallealarlLarLHqvd.ppalpla..... e +++++ls +++l+++La+LH +++ + + ++ ++ bm04664 93 EHMDMRHLSS-----------HAAKLGAQLADLHLDNkKLGEMRLkeagt 131 ................................rrlerrlkllrqlaaala ++++++++++ + + + + + ++ +++ +++ ++ +rq+++ ++ bm04664 132 vgrgggqeerpfvarfgfdvvtccgylpqvndWQEDWVVFYARQRIQPQM 181 rlvaaelldeerglllelaerllaaleallp........ppvlvHGDlhp + v e +d + a +l+ al p+ ++ + p+l+HGDl+ bm04664 182 DMVEKESGD-------REALQLWSALQLKIPdlfrdleiIPALLHGDLWG 224 gNvlvddapdggrvsGvIDfedaglGdpayDlAmllrslfgeefdpefld gNv d g+v ++D++ + +G+ +y+lA++ + fg +f+ +f+ bm04664 225 GNVAED---SSGPV--IFDPA-SFYGHSEYELAIAG-M-FG-GFSSSFYS 265 aylaaygrqfaapglerlrel<-* ay + apg+e++ l bm04664 266 AYHGKIPK---APGFEKRLQL 283 PF01636.13.ls: domain 1 of 1, from 7 to 283: score 93.8, E = 5e-25 *->elrplsgGasnrtylvt...............tgdgdapryvlrlap el + G+s+ +++t++++++ +++++ +t++g r++++++p bm04664 7 ELLRRELGCSS--VRATghsgggcisqgrsydTDQG---RVFVKVNP 48 pgelaeelerEaavl.rhLaalgipvpvpvPrvlaggtdgeglglpflll ++e++ ++e E+a l+++L+ + + vP+++ ++d+ g g +l++ bm04664 49 KAEARRMFEGEMASLtAILKTNTV----KVPKPIK-VLDAPGGGS-VLVM 92 eglpGevlsrpdalspaerpallealarlLarLHqvd.ppalpla..... e +++++ls +++l+++La+LH +++ + + ++ ++ bm04664 93 EHMDMRHLSS-----------HAAKLGAQLADLHLDNkKLGEMRLkeagt 131 ................................rrlerrlkllrqlaaala ++++++++++ + + + + + ++ +++ +++ ++ +rq+++ ++ bm04664 132 vgrgggqeerpfvarfgfdvvtccgylpqvndWQEDWVVFYARQRIQPQM 181 rlvaaelldeerglllelaerllaaleallp........ppvlvHGDlhp + v e +d + a +l+ al p+ ++ + p+l+HGDl+ bm04664 182 DMVEKESGD-------REALQLWSALQLKIPdlfrdleiIPALLHGDLWG 224 gNvlvddapdggrvsGvIDfedaglGdpayDlAmllrslfgeefdpefld gNv d g+v ++D++ + +G+ +y+lA++ + fg +f+ +f+ bm04664 225 GNVAED---SSGPV--IFDPA-SFYGHSEYELAIAG-M-FG-GFSSSFYS 265 aylaaygrqfaapglerlrel<-* ay + apg+e++ l bm04664 266 AYHGKIPK---APGFEKRLQL 283 PF03881.5.ls: domain 1 of 1, from 8 to 310: score 97.3, E = 4.3e-26 *->MWqaIsQqLSeQlGkdFeIkekekvhGGeineawilsDGiqkyFVKv +L lG ++ GG+i ++ + ++FVKv bm04664 8 -------LLRRELGCS-SVRATGHSGGGCISQGRSYDTDQGRVFVKV 46 N.qreflsmFtAEAdqLellaksnTvrVPkvilv.GaSktHSfLVLeyLp N+ +e + mF E L + k+nTv+VPk+i v a + S LV+e bm04664 47 NpKAEARRMFEGEMASLTAILKTNTVKVPKPIKVlDAPGGGSVLVMEHMD 96 ldktdpvDasykFiLGqQLAkLH..................qwggqkq.. + + ++ + LG QLA LH ++++ ++ + ++ ++ ++ ggq++++ bm04664 97 ---MRHLSSHAAK-LGAQLADLHldnkklgemrlkeagtvgRGGGQEErp 142 ....FGlDfDNalGaTpQPNpWkekWAtFFAEQRIGWQLqLarEKgv... +FG+D+ + G pQ N W+e W F A QRI Q + ++++ bm04664 143 fvarFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMVEKESGdre 192 nFgdIevlVekVkqlLAkHqPqPaLLHGDLWsGNcAlvkdGEPlifDPAC ++ +l k+ l + PaLLHGDLW GN+A G P+ifDPA bm04664 193 ALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSG-PVIFDPAS 241 YWGDRECDLAmaELFggFPpqFYqGYeSvsPldeGYeERKaiYqLYhlLN +G E LA a FggF FY Y+ P +G+e R +YqL h LN bm04664 242 FYGHSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLN 291 hanlFGGhYlelAQkllekiLsa<-* h n FG +Y + + i + bm04664 292 HWNHFGSGY----RGSSLNIMRN 310 PF03881.5.fs: domain 1 of 3, from 26 to 116: score 28.6, E = 2.2e-09 *->GGeineawilsDGiqkyFVKvN.qreflsmFtAEAdqLellaksnTv GG+i ++ + ++FVKvN+ +e + mF E L + k+nTv bm04664 26 GGCISQGRSYDTDQGRVFVKVNpKAEARRMFEGEMASLTAILKTNTV 72 rVPkvilv.GaSktHSfLVLeyLpldktdpvDasykFiLGqQLAkLHq<- +VPk+i v a + S LV+e + + ++ + LG QLA LH+ bm04664 73 KVPKPIKVlDAPGGGSVLVMEHMD---MRHLSSHAAK-LGAQLADLHL 116 * bm04664 - - PF03881.5.fs: domain 3 of 3, from 215 to 300: score 94.7, E = 7.1e-31 *->PaLLHGDLWsGNcAlvkdGEPlifDPACYWGDRECDLAmaELFggFP PaLLHGDLW GN+A G P+ifDPA +G E LA a FggF bm04664 215 PALLHGDLWGGNVAEDSSG-PVIFDPASFYGHSEYELAIAGMFGGFS 260 pqFYqGYeSvsPldeGYeERKaiYqLYhlLNhanlFGGhY<-* FY Y+ P +G+e R +YqL h LNh n FG +Y bm04664 261 SSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGY 300 //